Gene detail

Detailed information of gene24967.t1 in Actinoscyphia liui

Genomic Location: chr7:19490586...19513039
NR annotation: KXJ20028.1, Transmembrane protease serine 9 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene24967.t1

ATGTGGGCCAAATTACTGCTTCTTATCTTCGCCTTATTAGTGGCGTCTGCACAAGAACATAACGAACCTTCAAACGAGCTTTCTGACACAGAGGACTCAGAACAGGAGTTTGAAGATGAGGGCGATGAAAAGTCTGGTTCCAACATACTGCAAGGTAGTTGTGGTAAACGTCCAAAGATGACTCGTATTGTGGGAGGAAGCCAAGCTAAGGTTCACAGTTGGCCCTGGCAAGCCATGCTTACTTCCACATCAGGAAGGCAATTCTGTGGAGGTTCATTGGTCCACCCAGAGTATGTGGTCACAGCATCCCACTGCGTCGTCAGGCAAAGCCCTTCAAGAGTCGTAATAAGATTGGGAGCTCATTATCGAATCAACGGTTCCACTGGAAAAGAGCAGAACATTCCAGTTACCAAGATCTTCGTCCACCCAAAATACCACTCGCCTATGCAATACAGCAATGACATCGCAGTCCTCAAACTAGCTCGACCTGCTGTCTTAAACAACGCCGTTTCCACCGTCTGCATGCCCAACAGCAGTTTCTCACTCCCCTATGATGACCTGAACAAAAAGTGTTACATCACAGGATGGGGTACCCTCGCATCAGGAGGCTCCCAGCCCAACGTGTTAATGCAGGCATCGGTTCCTCTTGTGTCCAAGTCTCGCTGTCTCAAAGGCTATCCAGGCCAGATTCACGATTCCATGTTATGCGCAGGATTGGACAAAGGTGGCGTTGACGCATGTCAAGGCGACTCTGGAGGACCGCTGGTCTGTGAGTTCAACGGGCGCTGGTATCTTGAGGGTGCAACAAGCTGGGGACATGGTTGTGCTCGTCCCAACAAATATGGAGTCTATGCTCTTGTACGCTACAACCAGATCTGGGTACAAACAATTGTTTCAACAGGAGCTCCACCACCAACATCACCACCGCCCACCGCTGCACCTGGTGACATGACTACTAATTTTGAGTATCTTTTTAACTGGAAACAGTCTACAAACGACAAGTTTGATTGGTCACTAAGAAGTGGAGGCACTCCGTCATCGGCTACTGGTCCCAGTTCTGGTCAAAGTGGATCAGGTAACTACGCCTACATCGAGACGTCCAGTCCACGTGTGAACGGTGACAATGCTAAACTGGAGTTCAAAGGTTCTTACAGTGGAGATATGTGCATGACTTTCTACTACCACATGTATGGAGCAGATATCAACACATTAAACATCTATAGCAGCAACAAGGTCGTATTGACCAAGAAGGGCCAGCAAGGAAACGCCTGGCACAAGGCCTCAGTCACCCTAAAAGGAAATCTTCATGTTGTCATTGAAGGTGTTCGTGGTGGTTCATATAGAGGAGATATTGCCATTGATTCTATCACTGCAACCAAAGGAGCATGTAGTTCTCCAACTCCACCTCCAACCCCTCCACCACCACAGACTCCACCACCACCAACCCAATCACCACCAACCCCACCACCACCAACCCAAGCACCACAGACTCCACCACCACCGACCCAGGCACCAGTTCCAGGCCAGTGTGGGGTGTCATCAGTATCACGTGTCATCGCAGGAGTGGATGCTAAGCCAGGAGCGTGGCCGTGGCAGATTGGCCTCCATCGCAGTGGACGCTTTATCTGTGGTGGATCTCTGATCAAACCAAACTGGATCGTGACAGCAGCTCATTGCGTTACACAAAACAACCCAGCACTGTACACCATTCGTCTTGGTGATCACAATCGTAACGTTAACGAAGGAACAGAACAAGAAATCAAAGCAATCAGAGTCATCTCTCATCCAAACTACAACAACCCAAGACTCAATAATGACATCGCTTTGATCCAACTGCAAAGACCAGCAACCCTCAACAGTCGTGTGGGTCTTGTTTGTCTGCCAGATCAAGACTATGTTGTTCCCGCTGGATCCTACTGTTACATCACAGGTACTCTACCACCAACAACACCACGACCTACCCTTGCACCTGGTGACATGACTACTAATTTCGAGAATCTTGGAAACTGGAAACAGTCTTCAAGCGACAAGTTTAATTGGTCACTAAGAAGTGGAGGCACTCCGTCATCGGCTACTGGTCCCAGTTCTGGTCAAAGTGGATCAGGTAACTATGCCTACATCGAGACGTCCAGTCCACGTGTGAACGGTGACAATGCTAAACTGGAGTTCAGAGGTTCTTACAGTGGAGATATGTGCATGACTTTCTACTACCACATGTATGGACAAACCATCAACACATTAAACATCTATAGCAACAACAAGGTCGTATTCAGCAAGAAGGGCCAGCAAGGAAACACCTGGCACAAGGCCTCAGTCACACTTAAAGGGAACATTAATGTTGTCATTGAAGGTGTTCGTGGCAGTTCATACACAGGAGATATTGCTATCGATACCATCGCTGTAACAAAAGGAGCATGTAGCTCTCCAACTGCACTTCCAAGCCCTCCGCCACCACAAACACCATCTCCACCAACACAACAACCACATACTCCACCACCACCAACCAAGCCACCAGTTCCAGGCCAGTGTGGAGTGTCATCAGTATCACGTGTTATCGCAGGAGTGGATGCTAAGCCAGGGGCGTGGCCTTGGCAGATCGGCCTCCATCGCAATGGACGCTTTATCTGTGGTGGATCTCTCATCAAACCAAACTGGATATTGACAGCAGCTCATTGCGTTACACAAAGCAACCCAGCCCTGTACATGATTCGTCTTGGTGATCACAATCGCAACGTTAACGAAGGAACAGAACAAGAAATTAAAGCCATCAAAGTCATCTCTCATCCAAACTACAACAACCCAAGACTCAATAATGACATCGCTTTGATCCAACTTGAACGATCAGCGACCCTCAACAGTCGTGTGGGTCTTGCTTGTCTGCCAGATCAAGACTATGTTCTTCCTGCTGCATCCAACTGTTACATTACAGGTACACCGGCACCACCAACCCAACCACCACATACTCCATCACCACCAACCCAACCACCACAGACTCCACCACCACCAACCCGACCTCCACAGACTCCACCACCACCAACCCAACTACCAGGTAGTTGTGGTAAACGTCCAACGATGACTCGTATTGTGGGAGGAAGCCAAGCTAAGGTTCACAGTTGGCCCTGGCAAGCCATGCTTACTTCCACCTCAGGCCGGCAATTCTGTGGAGGTGCGTTGGTCCATCCACAGTACGTAGTCACAGCAACCCATTGCGTCGCCGGAAAAGCCGCTTCGCAAGTCGTAATAAAAATGGGAGCTCATTATCGAGTCAGCGGTTCCACTGGAAAAGAGCAGAACATTCAAGTTGCCAAGATCTTCGTCCATCCACAATACCATAAGCCTTTGCGCTATAGCAATGACATCGCCGTCCTCAAACTGGCTCGACCCGCTGTCTTAAACAACGCCGTTTCCACCGTCTGCATGCCCGATAAAAGTTTCCCACTCCCCTATGATGACCTGAGCAAAAAGTGTTACATCACAGGATGGGGTACCCTCGCATCAGGAGGCTCCCAGCCCAACGTGTTAATGCAGGCATCGGTTCCTCTTGTGTCTAAGTCTCGCTGTCTCAAAGGCTATCCGGGTAAGATTCACGATTCCATGTTATGCGCAGGACTGGACAAAGGTGGCGTTGACGCATGTCAAGGTGACTCTGGAGGACCGCTGGTCTGTGAGTTCAACGGGCGCTGGTATCTTGAGGGTGCAACAAGCTGGGGATATGGTTGTGCTCTTCCCAACAAGTATGGAGTGTATGCTCTTGTACGCTACAACCAGAAATGGGTACAATCCATTGTTTCAACAGGAGGTCCTACTCCTCCACCAACATCACCACCACCCACAGCTGCACCTGGTGACATGACTGCTAATTTCGAGAATCTTGGAAACTGGAAACAGCCTTCAAGCGACAAGTTTGATTGGTCACTAAGAAGTGGAGGTACTCCGTCATCCTCTACTGGTCCCAGTTCTGGTCAAGGTGGATCAGGTAACTACGCCTACATCGAGACGTCCAGTCCACGTGTGAACGGTGACAATGCTAAACTGGAGTTCAAAGGTTCTTACAGTGGAGATATGTGCATGACTTTCTACTACCACATGTATGGAACAGATATCAACACATTAAACATCTATAGCAACAACAAGGTCGTATTCACCAAGAAGGGCCAGCAAGGAAACGCCTGGCACAAGGCCTCAGTCACCCTTAAAGGGAACCTTAATGTTGTCATTGAAGGAGTTCGTGGAAGTTCATACAGAGGCGATATTGCTATCGATACCATCGCTGTAACCAAAGGAGCATGCAGCTCTCCAACTGCACCTCCAGGCCCTCCGCCACCACCAACTCCTCCACCACCAACAAGACCACCACAAACTCCACCACCACCAACCCGACCAACACAGACTCCTCCACCACCAACCCAGCCACCAGTTCCAGGCCAGTGTGGAGTGTCATCAGTGTCACGTGTTATCGCAGGAGTGGATGCTAAGCCAGGGGCGTGGCCTTGGCAGATCGGCCTCCATCGCAGTGGACGCTTTATCTGTGGTGGATCTCTGATCAAACCAAACTGGATCGTAACGGCAGCTCATTGCGTTACACAGAGCAACCCAGCACTGTACACTATTCGTCTTGGTGATCACAATCGTAACGTTAACGAAGGAACAGAACAAGAAATCAAAGCCATCAAAGTCATCTCTCATCCAAACTACAACAACCCAAGACTCAATAATGACATCGCTTTGATCCAACTTGAACGATCAGCGACCCTCAACAGTCGTGTGGGTCTTGTTTGTCTGCCAGATCAAGACTATGTTCTTCCTGCTGCATCCAACTGTTACATTACAGGTACTCTACCACCAACAACACCACCACCCACAGCTGCACCTGGTGACATGACTGCTAATTTCGAGAATCTTGGAAACTGGAAACAGCCTTCAAGCGACAAGTTTGATTGGTCACTAAGAAGTGGAGGTACTCCGTCATCCTCTACTGGTCCCAGTTCTGGTCAAGGTGGATCAGGTAACTACGCCTACATCGAGACGTCCAGTCCACGTGTGAACGGTGACAATGCTAAACTGGAGTTCAAAGGTTCTTACAGTGGAGATATGTGCATGACTTTCTACTACCACATGTATGGAACAGATATCAACACATTAAACATCTATAGCAACAACAAGGTCGTATTCACCAAGAAGGGCCAGCAAGGAAACGCCTGGCACAAGGCCTCAGTCACCCTTAAAGGGAACCTTAATGTTGTCATTGAAGGAGTTCGTGGAAGTTCATACAGAGGCGATATTGCTATCGATACCATCGCTGTAACCAAAGGAGCATGCAGCTCTCCAACTGCACCTCCAAGCCCTCCGCCACCACCAACTCCTCCACCACCAACAAGACCACCACCAACTCCACCACCACCAACCCGACCAACACAGACTCCTCCACCACCAACCCAGCCACCAGTTCCAGGCCAGTGTGGAGTGTCATCAGTGTCACGTGTTATCGCAGGGGTGGATGCTAAGCCAGGGGCGTGGCCTTGGCAGATCGGCCTCCATCGCAGTGGACGCTTTATCTGTGGTGGATCTCTGATCAAACCAAACTGGATCGTAACGGCAGCTCATTGCGTTACACAGAGCAACCCAGCACTGTACACTATTCGTCTTGGTGATCACAATCGTAACGTTAACGAAGGAACAGAACAAGAAATCAAAGCCATCAAAGTCATCTCTCATCCAAACTACAACAACCCAAGACTCAATAATGACATCGCTTTGATCCAACTTGAACGATCAGCGACCCTCAACAGTCGTGTGGGTCTTGTTTGTCTGCCAGATCAAGACTATGTTCTTCCTGCTGCATCCAACTGTTACATTACAGGTACTCTACCACCAACAACACCACCACCCACAGCTGCACCTGGTGACATGACTGCTAATTTCGAGAATCTTGGAAACTGGAAACAGCCTTCAAGCGACAAGTTTGATTGGTCACTAAGAAGTGGAGGTACTCCGTCATCCTCTACTGGTCCCAGTTCTGGTCAAGGTGGATCAGGTAACTACGCCTACATCGAGACGTCCAGTCCACGTGTGAACGGTGACAATGCTAAACTGGAGTTCAAAGGTTCTTACAGTGGAGATATGTGCATGACTTTCTACTACCACATGTATGGAACAGATATCAACACATTAAACATCTATAGCAACAACAAGGTCGTATTCACCAAGAAGGGCCAGCAAGGAAACGCCTGGCACAAGGCCTCAGTCACCCTTAAAGGGAACCTTAATGTTGTCATTGAAGGAGTTCGTGGAAGTTCATACAGAGGCGATATTGCTATCGATACCATCGCTGTAACCAAAGGAGCATGCAGCTCTCCAACTGCACCTCCAAGCCCTCCGCCACCACCAACTCCTCCACCACCAACAAGACCACCACAAACTCCACCACCACCAACCCGACCAACACAGACTCCTCCACCACCAACCCAGCCACCAGTTCCAGGCCAGTGTGGAGTGTCATCAGTGTCACGTGTTATCGCAGGAGTGGATGCTAAGCCAGGGGCGTGGCCTTGGCAGATCGGCCTCCATCGCAGTGGACGCTTTATCTGTGGTGGATCTCTGATCAAACCAAACTGGATCGTAACAGCAGCTCATTGCGTTACACAGAGCAACCCAGCACTGTACACCATTCGTCTTGGTGATCACAATCGTAACGTTAACGAAGGAACAGAACAAGAAATTAAAGCCATCAAAGTCATCTCTCATCCAAGCTACAACAACCCAAGACTCAATAATGACATCGCTTTGATCCAACTTGAACGATCAGCGACCCTCAACAGTCGTGTGGGTCTTGTTTGTCTGCCAGATCAAGACTATGTTCTTCCTGCTGCATCCAACTGTTACATTACAGGTACTCTACCACCAACAACACCACCACCCACAGCTGCACCTGGTGACATGACTGCTAATTTCGAGAATCTTGGAAACTGGAAACAGCCTTCAAGCGACAAGTTTGATTGGTCACTAAGAAGTGGAGGTACTCCGTCATCCTCTACTGGACCCAGTTCTGGTCAAGGTGGAACAGGTAACTACGCCTACATCGAGACGTCCAGTCCACGTGTGAACGGTGACAATGCTAAACTGGAGTTCAAAGGTTCTTACAGTGGAGATATGTGCATGACTTTCTACTACCACATGTATGGAACAGATATCAACACATTAAACATATATAGCAACAACAAGGTCGTATTCACCAAGAAGGGCCAGCAAGGAAACGCCTGGCACAAGGCCTCAGTCACCCTTAAAGGGAACCTTAATGTTGTCATTGAAGGAGTTCGTGGAAGTTCATACAGAGGCGATATTGCTATCGATACCATCGCTGTAACCAAAGGAGCATGCAGCTCTCCAACTGCACCTCCAAGCCCTCCGCCACCACAAACTCCAACACCTGGCTGTCGGGGATAG

Transcript

gene24967.t1

Protein

gene24967.t1

MWAKLLLLIFALLVASAQEHNEPSNELSDTEDSEQEFEDEGDEKSGSNILQGSCGKRPKMTRIVGGSQAKVHSWPWQAMLTSTSGRQFCGGSLVHPEYVVTASHCVVRQSPSRVVIRLGAHYRINGSTGKEQNIPVTKIFVHPKYHSPMQYSNDIAVLKLARPAVLNNAVSTVCMPNSSFSLPYDDLNKKCYITGWGTLASGGSQPNVLMQASVPLVSKSRCLKGYPGQIHDSMLCAGLDKGGVDACQGDSGGPLVCEFNGRWYLEGATSWGHGCARPNKYGVYALVRYNQIWVQTIVSTGAPPPTSPPPTAAPGDMTTNFEYLFNWKQSTNDKFDWSLRSGGTPSSATGPSSGQSGSGNYAYIETSSPRVNGDNAKLEFKGSYSGDMCMTFYYHMYGADINTLNIYSSNKVVLTKKGQQGNAWHKASVTLKGNLHVVIEGVRGGSYRGDIAIDSITATKGACSSPTPPPTPPPPQTPPPPTQSPPTPPPPTQAPQTPPPPTQAPVPGQCGVSSVSRVIAGVDAKPGAWPWQIGLHRSGRFICGGSLIKPNWIVTAAHCVTQNNPALYTIRLGDHNRNVNEGTEQEIKAIRVISHPNYNNPRLNNDIALIQLQRPATLNSRVGLVCLPDQDYVVPAGSYCYITGTLPPTTPRPTLAPGDMTTNFENLGNWKQSSSDKFNWSLRSGGTPSSATGPSSGQSGSGNYAYIETSSPRVNGDNAKLEFRGSYSGDMCMTFYYHMYGQTINTLNIYSNNKVVFSKKGQQGNTWHKASVTLKGNINVVIEGVRGSSYTGDIAIDTIAVTKGACSSPTALPSPPPPQTPSPPTQQPHTPPPPTKPPVPGQCGVSSVSRVIAGVDAKPGAWPWQIGLHRNGRFICGGSLIKPNWILTAAHCVTQSNPALYMIRLGDHNRNVNEGTEQEIKAIKVISHPNYNNPRLNNDIALIQLERSATLNSRVGLACLPDQDYVLPAASNCYITGTPAPPTQPPHTPSPPTQPPQTPPPPTRPPQTPPPPTQLPGSCGKRPTMTRIVGGSQAKVHSWPWQAMLTSTSGRQFCGGALVHPQYVVTATHCVAGKAASQVVIKMGAHYRVSGSTGKEQNIQVAKIFVHPQYHKPLRYSNDIAVLKLARPAVLNNAVSTVCMPDKSFPLPYDDLSKKCYITGWGTLASGGSQPNVLMQASVPLVSKSRCLKGYPGKIHDSMLCAGLDKGGVDACQGDSGGPLVCEFNGRWYLEGATSWGYGCALPNKYGVYALVRYNQKWVQSIVSTGGPTPPPTSPPPTAAPGDMTANFENLGNWKQPSSDKFDWSLRSGGTPSSSTGPSSGQGGSGNYAYIETSSPRVNGDNAKLEFKGSYSGDMCMTFYYHMYGTDINTLNIYSNNKVVFTKKGQQGNAWHKASVTLKGNLNVVIEGVRGSSYRGDIAIDTIAVTKGACSSPTAPPGPPPPPTPPPPTRPPQTPPPPTRPTQTPPPPTQPPVPGQCGVSSVSRVIAGVDAKPGAWPWQIGLHRSGRFICGGSLIKPNWIVTAAHCVTQSNPALYTIRLGDHNRNVNEGTEQEIKAIKVISHPNYNNPRLNNDIALIQLERSATLNSRVGLVCLPDQDYVLPAASNCYITGTLPPTTPPPTAAPGDMTANFENLGNWKQPSSDKFDWSLRSGGTPSSSTGPSSGQGGSGNYAYIETSSPRVNGDNAKLEFKGSYSGDMCMTFYYHMYGTDINTLNIYSNNKVVFTKKGQQGNAWHKASVTLKGNLNVVIEGVRGSSYRGDIAIDTIAVTKGACSSPTAPPSPPPPPTPPPPTRPPPTPPPPTRPTQTPPPPTQPPVPGQCGVSSVSRVIAGVDAKPGAWPWQIGLHRSGRFICGGSLIKPNWIVTAAHCVTQSNPALYTIRLGDHNRNVNEGTEQEIKAIKVISHPNYNNPRLNNDIALIQLERSATLNSRVGLVCLPDQDYVLPAASNCYITGTLPPTTPPPTAAPGDMTANFENLGNWKQPSSDKFDWSLRSGGTPSSSTGPSSGQGGSGNYAYIETSSPRVNGDNAKLEFKGSYSGDMCMTFYYHMYGTDINTLNIYSNNKVVFTKKGQQGNAWHKASVTLKGNLNVVIEGVRGSSYRGDIAIDTIAVTKGACSSPTAPPSPPPPPTPPPPTRPPQTPPPPTRPTQTPPPPTQPPVPGQCGVSSVSRVIAGVDAKPGAWPWQIGLHRSGRFICGGSLIKPNWIVTAAHCVTQSNPALYTIRLGDHNRNVNEGTEQEIKAIKVISHPSYNNPRLNNDIALIQLERSATLNSRVGLVCLPDQDYVLPAASNCYITGTLPPTTPPPTAAPGDMTANFENLGNWKQPSSDKFDWSLRSGGTPSSSTGPSSGQGGTGNYAYIETSSPRVNGDNAKLEFKGSYSGDMCMTFYYHMYGTDINTLNIYSNNKVVFTKKGQQGNAWHKASVTLKGNLNVVIEGVRGSSYRGDIAIDTIAVTKGACSSPTAPPSPPPPQTPTPGCRG

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3EWZ6	MAM and LDL-receptor class A domain-containing protein 2 (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
B3EWZ5	MAM and LDL-receptor class A domain-containing protein 1 (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
B8V7S0	CUB and peptidase domain-containing protein 1 (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000031 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan
PF00629 all species →	MAM	MAM domain, meprin/A5/mu	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR018114 all species →	Active_site	Serine proteases, trypsin family, histidine active site	Interproscan
IPR000998 all species →	Domain	MAM domain	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR001314 all species →	Family	Peptidase S1A, chymotrypsin family	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR033116 all species →	Active_site	Serine proteases, trypsin family, serine active site	Interproscan
IPR050127 all species →	Family	Serine Proteases (Peptidase S1 Family)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24264 all species →	TRYPSIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene24967.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Actinoscyphia liui tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Actinoscyphia liui, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →