Gene detail

Detailed information of gene25038.t1 in Actinoscyphia liui

Genomic Location: chr7:20652514...20660705
NR annotation: KXJ25420.1, RNA polymerase II-associated protein 3 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H6T3	RNA polymerase II-associated protein 3 OS=Homo sapiens OX=9606 GN=RPAP3 PE=1 SV=2
Q9D706	RNA polymerase II-associated protein 3 OS=Mus musculus OX=10090 GN=Rpap3 PE=1 SV=1
Q68FQ7	RNA polymerase II-associated protein 3 OS=Rattus norvegicus OX=10116 GN=Rpap3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005989 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13877 all species →	RPAP3_C	Potential Monad-binding region of RPAP3	Domain	Interproscan
PF13414 all species →	TPR_11	TPR repeat	Repeat	Interproscan
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR025986 all species →	Domain	RNA-polymerase II-associated protein 3-like, C-terminal domain	Interproscan
IPR051966 all species →	Family	RNA polymerase II-associated protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46423 all species →	RNA POLYMERASE II-ASSOCIATED PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0101031 all species →	Cellular Component	protein folding chaperone complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23002	RPAP3; RNA polymerase II-associated protein 3	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.