Gene detail

Detailed information of gene25311.t1 in Actinoscyphia liui

Genomic Location: chr7:25791660...25820325
NR annotation: XP_020903271.1, transient receptor potential cation channel subfamily A member 1, partial [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

gene25311.t1

ATGACTTCCAATAGTCTTATTACAGAGAGTAATGGCTCTCTACCCATGATTGAATTGACTTCTGCAGCCGATGATGATGACCATCCACAAGCTTATAATAACGATGGGGTGGAAACACTAGAACTGCGGAAAAGAAAGATCACTCAAATAAGTATGGATTCCACACAGGAGAAAAGTACAGACGATGCTGATACGAAGGAGGATTCAAACGCTCCTAAAGGCAGCAAAGCACAAAGATTAAAAGATGCTATAATGTCAGGCAACCTTAGTACTGTACAAATCGTTCTGGACCAGAAGATCGATGTGAATATAAGTGACTCGTTTGGTCGGCCTGCTCTTCACAATGCTGTGCTTAAGGGTGACCCTAGAATAGTCAAGATGATTCTAGACGCTAATGGTGATGTTAACATCAAAGATGATAGAGAAGACTCGCCCTTACACTATGCTGTTAGAACTGGCAACGCAGAAATACTCGAGATTCTCCTTTCTAAACCTGATTGTGAGGTTAACATGAAAGGCAGTGGTTTAAATAGTCCTTTACATCTTGCTGCCAGCCTTAATAAACCTGACCTGTGTAAACTACTGTTGGAACACCATGCTAACCCGAGCATTCAAGAGGAAAGCGGCAAAACACCGCTGGGTAGAGCTGTGGAAAGTGGATCTCAGCATTCAGCCAAATACTTACTTGAATACATGAAAAGCTTGGGCATGGCAATGGATGAAATCCTGTACAACTCCGATTACGATGGGACTACGCTTCTGCACTTAGCAGTGGACAGCGGCTTTAAGGAGGTTGTGGAGATTTGTCTGGAGAATGGAGCAAGAATCAGGCACCCAAGGAGAAAAGATCGAACAACTGCTTTCCACTTGGCTTGTGAACAAGGCTCGTCGTCAATTGTCGAGCTATTGGTACAGCACGATCCTGCCATCGCTAAGATTCTACTCGTAAACAGTGAAGGTCTGACTCCACTGCACCAGGCAGCGAAGAGCAATAGTTATGGGATTGCTGACATACTGATTGAACAAGGTGCAAAGATTGACGCCCGCACTAATGACAACCGGACTCCATTGATGCTTGCTGGTAGCCGTGCTGCGATAGAAACCGTCAAACTTCTGCTAGAGAAAGGAGCTAACCCAACACTAAAAGATATTGATAACAGGACGGCTGTCTTTGATGTCGTTGGTCATGGTTCAGCATGTACGGACTTAATACTACAGCGTGGGCGTGCATTAGAACTAAGTGAAACACAAGCAACTCAAGTAGAAAAACCAGACTCTCAAGTCAATTCAGTGAAAGATAGTTGGAAAGCAAAACAAGCTCTTCCAAAGCACGTGCACGATGACAGATCCCGATCACGTGCTAGGCAACCAAGAACACAATCACGCAACAGACCCATGTCACGCGGTCGTCAAAATCAAAATCAAAATCAACGTCAATCTAATCAAGACAAGTTAGCCTGCTGGCATTGTGGCGGAAAATTTCCTCATAAAATGTCATGCCCTGCCAAAGATCAAGAATGTCGTTCGTGTGGAAAGACAGCTCACTTTGCACGTGTATGCCGAACGAATCCACCGACGAAACAGAGTCGCGTACGAAGTGTCACGCAAGATAACGCTGACAGATCAGATAACTTCAGCTCAGATGAAGGATACATTTACACAGTCAAGTCTCAAACAAGCACAAGCCCACCATCCTGCAAGGTGAAGATCGAAAAGAAATCAGTAGAAATGATGGTAGATTCTGGAGCAACGGTCAACCTGATAAATGAATCTACGTTCCACGCCATACGTCAAGACAAGCCAATGAAACTAGAGAACACAAAGCCCAAGATATACTCGTATGGTTCGAACATTCCAATAAACATCATCGGCACAATCGAAGCAAATATTTGTGTCCAATCCAACAGCACAACAGCCACACTTTTTGTAGTCAAAGGAGACGCCGAAAATTTGTTGAGCTACAACACAGCAAAAGATCTGGAACTAATTCAGATACAAGTCAACGCCCTTACGAAAACTGATCCGTACAGCTTAGATACGATTCTCCAAGAATTTGATTGCTTATTTGGCCCAATCAAGAAAGTTAAAGGAAAGACAATCAAGCTGCACATCGATGACAACGTCCCTCCAAAACAACAACCTCACCGTAGACTCCCGTTTCACGTTAGAGATGATGTTGAAAAGGAACTTGAAAGACTTGAAAAACTAGACCGTCTAGTTTTTTCAATGATGGCATCATTGAAGAGATTACTGGACCAACGCTCTGGGTTAGCCCAATTGTCGTCGTACCTAAAAAGTCTGGCGAAGTGA

Transcript

gene25311.t1

AAAGAACTCCAAACTGTGTTAGCAAGAAACTTGATTTCCTGGCCAAAGATCTGAAACACGATCAGTAGTCCGTAGTGGACAGTACTTGGTACCATCACCATGACTTCCAATAGTCTTATTACAGAGAGTAATGGCTCTCTACCCATGATTGAATTGACTTCTGCAGCCGATGATGATGACCATCCACAAGCTTATAATAACGATGGGGTGGAAACACTAGAACTGCGGAAAAGAAAGATCACTCAAATAAGTATGGATTCCACACAGGAGAAAAGTACAGACGATGCTGATACGAAGGAGGATTCAAACGCTCCTAAAGGCAGCAAAGCACAAAGATTAAAAGATGCTATAATGTCAGGCAACCTTAGTACTGTACAAATCGTTCTGGACCAGAAGATCGATGTGAATATAAGTGACTCGTTTGGTCGGCCTGCTCTTCACAATGCTGTGCTTAAGGGTGACCCTAGAATAGTCAAGATGATTCTAGACGCTAATGGTGATGTTAACATCAAAGATGATAGAGAAGACTCGCCCTTACACTATGCTGTTAGAACTGGCAACGCAGAAATACTCGAGATTCTCCTTTCTAAACCTGATTGTGAGGTTAACATGAAAGGCAGTGGTTTAAATAGTCCTTTACATCTTGCTGCCAGCCTTAATAAACCTGACCTGTGTAAACTACTGTTGGAACACCATGCTAACCCGAGCATTCAAGAGGAAAGCGGCAAAACACCGCTGGGTAGAGCTGTGGAAAGTGGATCTCAGCATTCAGCCAAATACTTACTTGAATACATGAAAAGCTTGGGCATGGCAATGGATGAAATCCTGTACAACTCCGATTACGATGGGACTACGCTTCTGCACTTAGCAGTGGACAGCGGCTTTAAGGAGGTTGTGGAGATTTGTCTGGAGAATGGAGCAAGAATCAGGCACCCAAGGAGAAAAGATCGAACAACTGCTTTCCACTTGGCTTGTGAACAAGGCTCGTCGTCAATTGTCGAGCTATTGGTACAGCACGATCCTGCCATCGCTAAGATTCTACTCGTAAACAGTGAAGGTCTGACTCCACTGCACCAGGCAGCGAAGAGCAATAGTTATGGGATTGCTGACATACTGATTGAACAAGGTGCAAAGATTGACGCCCGCACTAATGACAACCGGACTCCATTGATGCTTGCTGGTAGCCGTGCTGCGATAGAAACCGTCAAACTTCTGCTAGAGAAAGGAGCTAACCCAACACTAAAAGATATTGATAACAGGACGGCTGTCTTTGATGTCGTTGGTCATGGTTCAGCATGTACGGACTTAATACTACAGCGTGGGCGTGCATTAGAACTAAGTGAAACACAAGCAACTCAAGTAGAAAAACCAGACTCTCAAGTCAATTCAGTGAAAGATAGTTGGAAAGCAAAACAAGCTCTTCCAAAGCACGTGCACGATGACAGATCCCGATCACGTGCTAGGCAACCAAGAACACAATCACGCAACAGACCCATGTCACGCGGTCGTCAAAATCAAAATCAAAATCAACGTCAATCTAATCAAGACAAGTTAGCCTGCTGGCATTGTGGCGGAAAATTTCCTCATAAAATGTCATGCCCTGCCAAAGATCAAGAATGTCGTTCGTGTGGAAAGACAGCTCACTTTGCACGTGTATGCCGAACGAATCCACCGACGAAACAGAGTCGCGTACGAAGTGTCACGCAAGATAACGCTGACAGATCAGATAACTTCAGCTCAGATGAAGGATACATTTACACAGTCAAGTCTCAAACAAGCACAAGCCCACCATCCTGCAAGGTGAAGATCGAAAAGAAATCAGTAGAAATGATGGTAGATTCTGGAGCAACGGTCAACCTGATAAATGAATCTACGTTCCACGCCATACGTCAAGACAAGCCAATGAAACTAGAGAACACAAAGCCCAAGATATACTCGTATGGTTCGAACATTCCAATAAACATCATCGGCACAATCGAAGCAAATATTTGTGTCCAATCCAACAGCACAACAGCCACACTTTTTGTAGTCAAAGGAGACGCCGAAAATTTGTTGAGCTACAACACAGCAAAAGATCTGGAACTAATTCAGATACAAGTCAACGCCCTTACGAAAACTGATCCGTACAGCTTAGATACGATTCTCCAAGAATTTGATTGCTTATTTGGCCCAATCAAGAAAGTTAAAGGAAAGACAATCAAGCTGCACATCGATGACAACGTCCCTCCAAAACAACAACCTCACCGTAGACTCCCGTTTCACGTTAGAGATGATGTTGAAAAGGAACTTGAAAGACTTGAAAAACTAGACCGTCTAGTTTTTTCAATGATGGCATCATTGAAGAGATTACTGGACCAACGCTCTGGGTTAGCCCAATTGTCGTCGTACCTAAAAAGTCTGGCGAAGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR051616	Family	Cul2-RING E3 ligase substrate-recognition	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46224	ANKYRIN REPEAT FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan