Gene detail

Detailed information of gene25833.t3 in Actinoscyphia liui

Genomic Location: chr7:36659981...36662503
NR annotation: XP_032231037.1, uncharacterized protein LOC116614299 [Nematostella vectensis]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene25833.t3

ATGGCAGATGTGGAACAGCTGTCACAGAGGTTGGCTGAGCTTCAGGCGAGACTCGACGAGGTGACTCAGGCGGCTGCAGATTCTACAGCTGGACCAAGTGCCCAAGCGCAAGCAGCACCCACCATCAAAGTCAGCGTGCCCCGAGAAAGGAAGCTGCGCAAGTACCAAGGCGTGAGGGATGACAAGATCCTGGAAGATTGGGTGGAGGATGCAAAGAGAGCAGTAGCCGCCCAGAAGCTCACTGGTGCTGATGCAGTGGACTTCCTCTACAACAATCTAGAGGGAGTTGCCAAGGACGAGGTGAGGCTGAGGCCATCCACAGAGTGGAGTACCCCTGATGCTGTGTACCAGATTCTCCGGGACACCTTTGGGGAAAAGTTAACAAAGACCCAGTTACTGCAGAGGTTCTTTGGTCGTCGACAGAAAGATAGAGAATCAATCCAAGATTTCTCGTATGCTTTGATGACCACCATGGAACAACTACAGAAGGCATACCCAGGGGCTGTCCCCGAAAAAGATAGAGTGCTGAGGGACCACTTTGTGGAGAATCTACGAGACCCACAGCTACGAAGGGATCTACGGAGGCTGACACGGGAGCACCCACTAAAAACATTCCATGATCTTCGGGATGAAGCTCGTCGGAGTATGGAGGAAGGCCACCTGCAGTCCAGACAAGCTGTCATCCGGGAGGTGGAGGCAGAATGCAACCAGGTCAATGGACTCTCACCCAAGATCATCCAAGATCTCCTGACAGGACAGAAGCTGCTGGCAGAAGGTCTCAAGCAACAGCAAAAGATCCTGGCTGAAACGCAGGCAGCACTGTCCTCTCTTACTACTCAAGTACATGTAACTCAAAAGAAGGAGAGGCGGTGTTTTTACTGCAGTGACCCTGGACACATTAGACCTCATTGCCCAAAGCTGCAGGGAGATCTGGCAGAGAAGTCAAAGAAATATGATGGAAAGTTGGCGGATGACATCAAGATAGTCGGCGCAAGCCCTATCGTTGTGGCAAAGGTTGGAGGAGTCCCAGTACAGAGTTTAGTGGATACTGGTTCCATGGTGACCTTCATCACAGAGTCATTCTTCAAGAAGAAGCTGCAGCCAATGCATGGAGACCTCATGGAGAAGAGTTCGGTTATTGAGCTCCGAGGGGCGAATGGCCTGGAGATCCCCTACATTGGCTACATCAAGACAACCGTAGAGATCGATGGAGTAATAGTACCAAATTGTGGGGTACTGGTGATGAAGGACACTCCAGCCACTACGCGGATGCGAGGGGGTGCGCCTGGACTAATTGGAACAAACGTTCTGGGACAGGTGCCCAAGTACAAGGATATTCTTGAACTGCATGGACAAGAACGCATTGAAAAACTAAGAACTGGATTTGTTAAAGTGGCTGGCAGAGACAAAGTCTGGGTGCCACCCTTTACCGAGTCTGACGTGACAGTTACTGGTCCAACTTGGGGAACAAGTGCAGTTGTTGAACCTCTTGGAGTACCGGTACAAGGAAACCTTACAGTAGCTAACACTCTCGTTGATACAACCAAGTCGTGTTTTGTGATCCGCGTTGCTAATCACACCGCAAAGGATATTTGGCTCAAGCCAAGGACACGCATTGGTATCATCAGAGAGGGAGCAGTGGTCCAGACAGGAGAACAGTTGGAGTTCTATCAGGAAAGCAACAGAGTAACTGTCTCTTGCAACCTCAGTGCTAGCCCCCAGCAGCCACCCTCACGGGAGGCTGAGGGCACCGCACAACGGCAGAGGAAGCAAGAGCTCCCAAATGGGATTACTCTGGACAACTTTCCTGGGACGGCACAACAACTGGAGGAGGTTCTGGCCCTGTTCACAGAGTACAAGGGAGTGTTTGCTACTAGTAAGGAAGACCTGGGGTGTACGTCGACAGCATATCATCGAATCCACACGGAAGATGATGTCCCTGTCATGGAGCGCCACAGGAGGATACCACCCAACCAATTCCAAGAGGTACAACAACATCTACAGGAACTGTTACAAAAGGGCATTATAAAGCCTAGTAAGAGTGACTATGCATCCCCAATAGTCCTGGTGCGCAAGAAGTCTGGTGCTCTGCGTATGTGCGTGGATTATAGGAAACTAAATGCAAAGACTAAGCGTGATGCCTACCCACTGCCACGGATCGAGGAATCGCTGGACGCACTGCGAGGTGCGAAGTACTTTTCTACCATCGACTTGGCCTCAGCATATAACCAGAGGAACATCTGGAGCGCCTAA

Transcript

gene25833.t3

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1
Q7LHG5	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2
Q99315	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001309 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13975 all species →	gag-asp_proteas	gag-polyprotein putative aspartyl protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR034122 all species →	Domain	Retropepsin-like domain, bacterial	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19963 all species →	CCHC-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene25833.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.