Gene detail

Detailed information of gene25992.t1 in Actinoscyphia liui

Genomic Location: chr7:39724494...39729203
NR annotation: PFX16501.1, Transposon TX1 uncharacterized 149 kDa protein [Stylophora pistillata]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene25992.t1

ATGAGCGAATTTGGCCAGACACTTTCCTGTTCACATGAGGTTGAAGACGGAATTTGGACTGGTGATAGAACCGTCAATATGAAAATCGAGAAAGACATACCGTCGTGCGTTCGATTTGGAAAGTACCCAATGTATGTTAGATACAGGGGACAACGAATGTGTTGTCACCACTGTAACAGATGGGGACATGTCGTTTCAGTTTGCCCTTACAAAATCGGGAACCTGTGTATTCGTTGCGGAAGTGCAGATCATTTCACTCGCAACTGCAAACATCCATGGTCTACGGATAATCGTCCTGTCCCTCTAGCAACTGAACCACAATTGTCCGAATCTCAAGAAGTCCAGGATGTCCCACCACGCGCCGAAGATGTAAATCTAGAACATACAGAAACTGTCTGTGATCCGCCCCAGGTTGGACAAGTAAAATCTCAAAATTCAGACCAGTCCAAGCCCAGTCCTACCCGGAAAAAGAAAAAGAAGAAAAAGGAAAATCCAGCTGCTTTCGAGGGACTTGTTGAGTGCTCCATTTTAGACTCCAATTTTGACATAAATGACCTTCCTTTTGCGCCCCTGCTGGATCATCAACCCCTAGCTAAACATGAAAATGCCAACCGCTTCTCCGTCCTTGCTGAGGATTCTGAAAATTGTGATGTTGCCATTGATGCCCCTAACGGCCAAGATTCTGCTCCGTCTGCCGTCACTGCCGTGGCAAACGCTGTCCCTGAGTCAGAGGATTTGGCCTCCTCTGCATCCTGCTCTCATGACACACAAATGGAGACCCAACAGTTATTTACCCCCTCGCCACTGAACGAAGTAACAATTCCACCCATGGTACTTAAAGGTGCTAAAAGTAAAAATGAAACCCATAGCACCAGTGACATTGAATTGGCAGCCTGGTTTAAAAACTCCCCATTTTCTGTTTTTGGTTCTCACCTCTCTAATCACAGTGCCGGCGTTTGTATTTTGTACACATCGAAATTTACTGCCATTAACCAAACAAGTCACACTGCTGGACGTCTCTTAAAAGTTGACTTCAAATCATCTTCTCATGATTTTTCAGTATGCTGTATATATGCCCCAAATCAGTACGCTGAGAGAGAGGCCTTTTTTGGAAAGATTTCTGACTTTGTTCAAGGTGACTTGCCCACATTTCTACTGGGCGATTTCAACGCAGTTTTTGATCGAACTTTGGATCGTTTCACTTCACAGATGAACTTCACCATCCGCGATGGTTCTATCCCCTTGCAATCTCTGTTTGATGACGTCAATGTCGTGGACATTTGGCGTGTCTTAAACCCTAATCTCAAACGCTATACTTGGACCAAACCTGATGGCTCTATTTCTTCCCGGATAGATCTTATTGGTGTGCCGACAGTGTGGTCCTGTTTCACAAAATCTTGCAAAATTTCTCCGTGTCCTTACTCTGACCATTGTGCAATCAGTCTCGAAATTGCCGTTCCTAGTCCAATCGAAATTGGGCCTAGTTTTTGGAAGTTAAACGTTAGTATACTTCAAGAAGAGGAATATTTTAACATCATTTGTAATTTCTGGAAACGATGGTCTTCTCGTAAGAACCTTTTCAACGACCTCACCTTATGGTGGGATCAAGGTAAACTTTGGATACGTGACCTTTCTCTAAAATATTGCCGATCTCGTGCCATGAATCGTAGGTCGCGACGTACCGGTTTAGAAAAGACAGCAGCAGACCTTAAACTCAAGATTGATGCTGGTGACGTATCTGTCCTACACGATTATAAATCAATTCTTAATGAATTGTCTGACATGGACGCCATTGAAGCTGAAGGTTTAAAAGTTCGCTCAAGGATTCAAGTGGTAGAGGAAGGCGAGTCGTCTTCTTCCTTCTTCCTAAAATCTATTCGCAAGAAACGCTCAGACAACACGGTCTATTCAATTACTAACGACGCCGGCACTGAAGTCAATACCACAGCTGATGTGCTTTCGGCATGGCAAGAATTTTACTCTGAACTCTTTTCTGCATGTCCAACTGATTCTGACGTACAAAACATTCTACTGAGGAATCTTGAATCGCGCCTCGATAGTCAACAGTCTTCTATCTGCGAAGGGCTTTTATCAGAAGAAGAATGTTTTCTGGCTCTTAAAGGAATGTCCAAGAATAAAACGCCTGGGAACGATGGTCTCCCTGTAGAGTTCTTTCTCCGTTTCTGGTCTTGTCTAGGGAAAGATCTAGTTGAAGTCCTAAATACCGGGTATGAGCTGTCAGAACGTCTATCCACATCTCAACGTCGTGGAATCATTACTTTGGTCCCGAAAAAGGGTGACCTACGTCACAGAAAGAACTGGCGTCCTATCACATTGTTAAATGTAGACTACAAGATTGCTTCTCGAGCCATCTCTGGTCGCTTGCTAAAAGTCCTTAAATTTGTTATCTCCCCAGATCAGACAGGTTCTGTACCGGGACGATTTATAGGAGAGACCGTTGTATTATTACAAAATGTTGTTGACTACGCAACGGAATTTAACATACGATCCGCTGTGATTGCCCTAGATCAAGAAAAGGCCTTTGATAGGGTTGACTGGGCCTTTCTTCTCAAGACACTTCGTACTTTGGGTTTTGGACAATCTTTTATTCAGTGGGTGCGAACCTTTTACACCGACGTTCAGTCTTCTGTTCAAGTAAACGGTTTTTTTACTCCCTACTTTTCATTATCCCGTGGAGTACGCCAGGGGTGCCCCCTGTCTCCTCTTCTCTACATTATCAGTGCCGAAGTCCTCGCATGTAATATCCGGGCTTGTCCTAGAATCAAAGGTTTTCCTCTGCCAAACTCCTCCTCCCTTTCTGTTATAAACCAGTATGCTGATGATACCACGATAACTGTCGTTGATGATACCTCTATAAAAGCTGTGTTTGACATCTATGCGGTATATGAGGCTGCTTCTGGTGCAAAGTTAAATCCGGAAAAATCAAAGGGCCTTTGGTTAGGTCCCTGGAAAGATCGATCTGACCCTCCTGTCAACTTACTATGGTCGTCACAATCTATTCACTGTCTGGGTACTTTCATCGGTCCTAACATTCCACCCTCTTTGAATTGGGATACGCGGATTGACTCATGTGGGAATGTACTTGACCTCTGGCAACAACGCTGCCTATCGCTTCATGGAAAGTCTTTAGTAGCAAACGCTTTAGCCCTTTCAGGCCTTTGGTATTCGGCAACTGTTCTAAATCTGCCTAGTAACTTCCTCAGCACTATCAATTCCGTACTCTTTAAATTTATTTGGTCGAACAAGAAAGAACTAGTAGCTCGCAACTCAATGTATCTCGATAAATCTTTAGGGGGCTTCAAAGTAGTGAATGTCGAACTGAAGGTTCGCGCTCTCCACATTCAATGGATAAAACGCTTCATCTTCTATCCAAATAAGTGGTGTACTTTTTTCTCATTCTGTATCCGTCAATATTTTGGCACAGATATCTTGGATGTCCTCGCTCACCCAGCCTACTACCCGACAAATCTCCTTCCGCCATTCTTTGCATCAATCATCGAATCTTGGGCCCTTCTAGGTGGCCATAGCCGTCGTAACGTACTGCACCTTCCACCAGATGACGCAGGCAATCCTAGACCCTTATCGACCTGCACTACGAAGTTGGCCTACAATATCCTCCTTGTCGGTTCTATGGCACCTCCCCATTGTGTCCTCAAATTCCTTTCACTCTACGGTGCCCTTGACTGGAGTCAAGTTTGGGCTCAAGTCCACATCATGCCACTTGACAAATATTGCACAGACATCGTGTGGAAGATAGCACATGGCGTAATATACACAGCAGATCGCCTTGTTGGATTTGGTATGAACGTGGACCCCATGTGTTTCTGTGGGTCTGCTCTCGAAACTGCAAAACACCTCTTTTTTGAATGTTCAATTACACAGGCAGTCCTGATGAAAGTTCAAACGACGTTTTTAAAAGCTGTACCGTTCTGCCCTTACCTCTGCGTTCGACATTTGCTTTTTGGTTTCAATGAGGATGAAAGAGAGATTGTCCCTCCAGTATTTTCCTATGTTCTGAACTTAGTTAAATGTTTTATTTGGTTGTCCAGAAATAACTTCCGTTTTCGGGACAATCCAATCCCCTCTGCCACAAACATCTTGACCTCTGTTCGACATCGCTTATTCTTCTTCTTAAAAATCTATGGAAAGAGGTTCCAGTCTGACAGGAGGAAACGATACTTTCAGCGTTCCTGGAACGTCATTGGGAAATTCTGGCCAAATATTTAA

Transcript

gene25992.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P14381	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1
O00370	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1
P16423	Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000039 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13966 all species →	zf-RVT	zinc-binding in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR052343 all species →	Family	Diverse Retrotransposon and Effector-Associated Protein	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR026960 all species →	Domain	Reverse transcriptase zinc-binding domain	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46890 all species →	NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene25992.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.