Gene detail

Detailed information of gene26221.t1 in Actinoscyphia liui

Genomic Location: chr7:44940756...44968373
NR annotation: XP_020909457.1, high-affinity choline transporter 1 isoform X2 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q9VE46	High-affinity choline transporter 1 OS=Drosophila melanogaster OX=7227 GN=ChT PE=2 SV=2
O02228	High-affinity choline transporter 1 OS=Caenorhabditis elegans OX=6239 GN=cho-1 PE=2 SV=2
Q8BGY9	High affinity choline transporter 1 OS=Mus musculus OX=10090 GN=Slc5a7 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00474	SSF	Sodium:solute symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001734	Family	Sodium/solute symporter	Interproscan
IPR038377	Homologous_superfamily	Sodium/glucose symporter superfamily	Interproscan
IPR052244	Family	High-affinity choline transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45897	HIGH-AFFINITY CHOLINE TRANSPORTER 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0005307	Molecular Function	choline:sodium symporter activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008292	Biological Process	acetylcholine biosynthetic process	Interproscan
GO:0015871	Biological Process	choline transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14387	SLC5A7, CHT1; solute carrier family 5 (high affinity choline transporter), member 7	-	Transporters	ko02000	deepkoala