Detailed information of gene26319.t3 in Actinoscyphia liui

Genomic Location: chr8:1052435...1195275
NR annotation: XP_031558480.1, vacuolar protein sorting-associated protein 13D-like [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5THJ4Intermembrane lipid transfer protein VPS13D OS=Homo sapiens OX=9606 GN=VPS13D PE=1 SV=2
Q9VU08Intermembrane lipid transfer protein Vps13D OS=Drosophila melanogaster OX=7227 GN=Vps13D PE=1 SV=3
G0S3B8Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001911 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00627
all species →		UBAUBA/TS-N domainDomainInterproscan
PF06650
all species →		VPS13_VABVacuolar-sorting associated protein 13, adaptor binding domainDomainInterproscan
PF12624
all species →		Chorein_NVPS13-like, N-terminalDomainInterproscan
PF16909
all species →		VPS13_DH-likeVacuolar-sorting-associated 13 protein, DH-like domainFamilyInterproscan
PF16908
all species →		VPS13_ext_choreinVacuolar sorting-associated protein 13, extended-choreinRepeatInterproscan
PF16910
all species →		VPS13_mid_rptVPS13, central RBG modulesRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009060
all species →		Homologous_superfamilyUBA-like superfamilyInterproscan
IPR015940
all species →		DomainUbiquitin-associated domainInterproscan
IPR009543
all species →		DomainVacuolar protein sorting-associated protein 13, VPS13 adaptor binding domainInterproscan
IPR026854
all species →		DomainVacuolar protein sorting-associated protein 13-like, N-terminal domainInterproscan
IPR041969
all species →		DomainIntermembrane lipid transfer protein VPS13D, UBA domainInterproscan
IPR031645
all species →		DomainVacuolar protein sorting-associated protein 13, DH-like domainInterproscan
IPR031646
all species →		DomainVacuolar protein sorting-associated protein 13, extended choreinInterproscan
IPR031642
all species →		DomainVPS13, middle RBG modulesInterproscan
IPR026847
all species →		FamilyVacuolar protein sorting-associated protein 13Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16166
all species →		VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0006623
all species →		Biological Processprotein targeting to vacuoleInterproscan
GO:0007005
all species →		Biological Processmitochondrion organizationInterproscan
GO:0019898
all species →		Cellular Componentextrinsic component of membraneInterproscan
GO:0045053
all species →		Biological Processprotein retention in Golgi apparatusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene26319.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP