Detailed information of gene26366.t1 in Actinoscyphia liui

Genomic Location: chr8:2470480...2491247
NR annotation: XP_048252587.1, uncharacterized protein K02A2.6-like [Haliotis rufescens]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O93209Pro-Pol polyprotein OS=Feline foamy virus OX=53182 GN=pol PE=3 SV=1
P08361Gag-Pol polyprotein OS=Cas-Br-E murine leukemia virus OX=11792 GN=gag-pol PE=3 SV=2
Q8HXX6Ganglioside GM2 activator OS=Macaca fascicularis OX=9541 GN=GM2A PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001642 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078
all species →		RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF02140
all species →		Gal_LectinGalactose binding lectin domainDomainInterproscan
PF17919
all species →		RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF02221
all species →		E1_DerP2_DerF2ML domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477
all species →		DomainReverse transcriptase domainInterproscan
IPR043128
all species →		Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000922
all species →		DomainD-galactoside/L-rhamnose binding SUEL lectin domainInterproscan
IPR043502
all species →		Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR050951
all species →		FamilyRetrovirus-related Pol polyproteinInterproscan
IPR036846
all species →		Homologous_superfamilyGM2-AP, lipid-recognition domain superfamilyInterproscan
IPR043159
all species →		Homologous_superfamilyD-galactoside/L-rhamnose binding SUEL lectin domain superfamilyInterproscan
IPR041577
all species →		DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR003172
all species →		DomainMD-2-related lipid-recognition domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984
all species →		PROTEIN CBG26694Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0030246
all species →		Molecular Functioncarbohydrate bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene26366.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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