Gene detail

Detailed information of gene26368.t2 in Actinoscyphia liui

Genomic Location: chr8:2511670...2521541
NR annotation: XP_020916686.1, uncharacterized protein LOC110254068 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q60648	Ganglioside GM2 activator OS=Mus musculus OX=10090 GN=Gm2a PE=1 SV=2
Q8HXX6	Ganglioside GM2 activator OS=Macaca fascicularis OX=9541 GN=GM2A PE=2 SV=2
P17900	Ganglioside GM2 activator OS=Homo sapiens OX=9606 GN=GM2A PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001642 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02140 all species →	Gal_Lectin	Galactose binding lectin domain	Domain	Interproscan
PF02221 all species →	E1_DerP2_DerF2	ML domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036846 all species →	Homologous_superfamily	GM2-AP, lipid-recognition domain superfamily	Interproscan
IPR000922 all species →	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan
IPR003172 all species →	Domain	MD-2-related lipid-recognition domain	Interproscan
IPR028996 all species →	Family	Ganglioside GM2 activator	Interproscan
IPR043159 all species →	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17357 all species →	GM2 GANGLIOSIDE ACTIVATOR PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0005319 all species →	Molecular Function	lipid transporter activity	Interproscan
GO:0006689 all species →	Biological Process	ganglioside catabolic process	Interproscan
GO:0006869 all species →	Biological Process	lipid transport	Interproscan
GO:0008047 all species →	Molecular Function	enzyme activator activity	Interproscan
GO:0009898 all species →	Cellular Component	cytoplasmic side of plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene26368.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.