Gene detail

Detailed information of gene26750.t1 in Actinoscyphia liui

Genomic Location: chr8:10470400...10473267
NR annotation: XP_031572355.1, uncharacterized protein LOC116306428 [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene26750.t1

ATGGGTGATAAGACTGCTGTGCGTGTTGTTCTGGATGGACCAACTGGTGTTGGAAAGTCCTCGTTATTACGACATTTAACTGGACGTGGACGTGGTGACCTGCCTGAAATATGGGAACTAACAACTTGGACTTATAATGTAAATCAAATGCTATTTCAAATACAATTCTACGAATCAAACACATTAGACGGAAAGTTTTCTCCATATAATTTCCCTTGGAGCGTCATCATCGAGATGTTCGCGATTAATGACCCCAGAACTCTAGAAGAAGTTATCAATGTCAGAATTCCCTACATTAGGAAGCACACATTCTTGCCAATACTTCTTGTTGGAACCAAGAGCGACCTTAGACAAAACTACGACCAACCACAGTCTCATCTCTTTCCATTGGTATTTGGGCAATGTCTTGCTCATTTTGCTGGGGCCGTGAAATATGTTGAGTGTTCTGCCAGGTCTCATGAAGCTATTTATAAGGTATTAGAAGTGATAAAAGAGATCGGAAATATTGCTTCTTTTAAAAGGGAATATTGCCTCTACGGAATAACTAATGATGGATTAAGACGTTTGATTATTAATAAGATACCAATGAACGATGAATGGATGTCTGTCATAAATCATGCAATTGGTCCAGCAAGAAGTTGTCTTAAACCAGCTAACATAATACTGAGTAAACATCTGGAATTGCTTGACCAGACCTTGTTTGATGTTTTATCAAAAACAGAAATGTTTTCTTTGGAAGATTTTTGTTTCTGCAGAACCGAGGAAGTTGAGACAATTCTTTTAGCAAACTGTCTTCTTGATATTGAAGGTATTACTTTCAGTTACACAAAGGCAAGTTCTACATGGTGGTGTACTGATGAGCTTAAACACCAAACTTGTGATGATGTTCAAGCTTTTACAAGAGATTATGTGGTCTACAGGAAAGGCCCCATTTCAGTGCGCTTTGTAAAACAAGATTGCTCTGCTATTGAAAAGTATATTCTTTCAATCACTGAACAAATTGTTGTCCGAAGTTTGTTGATCATCAGCTGCACTGGAACGCTGTCGTTCAAGTTTCTATCTACCTTGCTAGAAGGTCTGGAATGTCTTGTAATCGTCGATACCAGTGTTGATTTCACTAGTCTTAACTTTCCATCAAACATCGTCCACTCTTTGACACATCTCATCCTCAAAAAGTGTGATACCGAAACAGCAGAAGTCCCTCCTGTGATAGGGAGGCTCAGCAACTTGGAGGTGTTGGATGTTACATGTAATCGCTTCACGGAACTTCCATTAACCATGGCTGGTCTTGACAAACTTTGTACACTAGAGTTTGATCGATCCGTCATGATTTTCCCACCGCTGCCAATCGTCAACATGTCCGCCACAGATGTCATCAAGTATCTAAAAGAAGTTCAGGAAGAGCCGGTTGATAACCTAGAAGCTAAACTGATAGTCGTAGGACAAGAGGGCGTTGGAAAAAGCACGCTCGTCAAAAGTTTGAAGCGAAGCCCCTTGTCACAGTGGATATGGAATACTATTCCACCAGATAAGACTGACGGTGTGGATGTGTCAGTTCTACAGTTGCCAGGGACTGACTGTAAAGTTTATGACCTTGCTGGAGATGTGGAATATCTTAATACACATTCTCTTTTTTTCTCTCCCAACTGTCTCCATTTGGCTGTATTCAATTTGAGTGAATTTGCAGTTTGCAATGACATTCGTTCCAACGATCAATTTTGTAGACTTCAACTTTGGCTTCAGACAATTGCATGTCAAGATCCGCACTCGTACGCCATTATTGTTGGTACCCATGCCGATCACTCGATGTTATGCGAAGAGATGCGCCTCAGAATTTGTGCCTTACTGGGCGAAATACTTAGCAAGTACCTTCCGCATTATAATAGCCCTTATTATAAAGAATGCTTGCTTTGTAATCCAGAGAAACGTTCTTCACAGGATACTTCTGCTCCTGATGAACTTCCAGTTCTCCATGCAGATCACTCACCTGGAACCAATTCCAACTCCAGCAGCATTCCGCACATTCTAGGTTACTATGAAGTAAGTGGTATCACAAACAAGAACATAAAGAATCTAAAACTTAAAATACAATCTTCCATTGCTGATATCAAGAAGTACACAAAAACTGATATCATACCCAAAAGGTGGTTGTCATTTCGCACATCTATCAAAACAAAGCTGTCAGAAGACGAAGAATTAAAGAAGCAGCCTCTTTTGTCGTTATCTTGTGTTCATGATCTTGCAAAAAAAGAAGGGATAGGAAATCCAAAGTCACAGTCATTAGAAGCTATGATGCGATTCTTTCATTCACAAGGTGATTTCCTCTGGTATGAGGACATACCTGAAATGAAAGACATCGTCATTCTGGATCCTCAGTGGCTTTCCGACCAGCTTCGAACTCTCATATCTCATCGTTCAAGTGTGGACGCCATCTGCGAAGGTGTATTACATCACTCAGAACTACGTGAAGTTTGGGTGGACATGGCTGAGGAAAACCGTTCCAAGCTTATCAGTCTGTTTAGAAGTGTGAGTTTGTGCTTTAGCATATCAGAGAGCCCAGAGACGGAGGAACTGTTTCCCTGCAAACTGCCCGTAGGATGGCCAGATAGAGAGATGTGGCCACCACTACCCAAGCAGAATGAAAACCAAACCAGCCTTTTGTTCCTGTTTAGCTTTGTACCTCCGTCATTGTTTCCTGATGTGATTGTGGACATCAACAAGAAGCGGGCGTCCTTTGCCTCCAACGTCAAACTTAACCTCTGTACTACCGCTTCAACGTGGTGTACATCACTCACGAACAAGGTATTTGCTCTTGTCACAAAGAAGAATACCTGGCCCCGGTTGCACAAAATACAGTGGATAAAATGA

Transcript

gene26750.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q55E58	Probable serine/threonine-protein kinase pats1 OS=Dictyostelium discoideum OX=44689 GN=pats1 PE=3 SV=1
Q6XHA5	Probable serine/threonine-protein kinase roco11 OS=Dictyostelium discoideum OX=44689 GN=roco11 PE=3 SV=1
Q8MVR1	Cyclic GMP-binding protein C OS=Dictyostelium discoideum OX=44689 GN=gbpC PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003176 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR020859 all species →	Domain	Roc domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR003578 all species →	Family	Small GTPase Rho	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072 all species →	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene26750.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.