Gene detail

Detailed information of gene26766.t1 in Actinoscyphia liui

Genomic Location: chr8:10798885...10813087
NR annotation: XP_028515655.1, uncharacterized protein LOC114575291 [Exaiptasia diaphana]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q923P0	Collagen alpha-1(XX) chain OS=Mus musculus OX=10090 GN=Col20a1 PE=2 SV=3
Q9P218	Collagen alpha-1(XX) chain OS=Homo sapiens OX=9606 GN=COL20A1 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00629	MAM	MAM domain, meprin/A5/mu	Domain	Interproscan
PF00092	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR000998	Domain	MAM domain	Interproscan
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR050685	Family	Low-density lipoprotein receptor	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24270	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan