Gene detail

Detailed information of gene26893.t2 in Actinoscyphia liui

Genomic Location: chr8:13723077...13731461
NR annotation: XP_031575458.1, neo-calmodulin [Actinia tenebrosa]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene26893.t2

CAGTGAGTAACAACTTTGCGTTGAGAACTCATCTCTGAAAACCTTCCACCACTTACTAAAAAAATGGCTGAAGATCAAAGCAGTTTTAACGAACAAGAAACGGCTGAGGTCAAACCCGAGTCTTCAGAGCCTAAACCCATACCATCTGTCCTGGAATCTGAATTCAAGGAGGCCTTCTCCCTATTCGACAAAGACGGTGATGGCACCATTACCACAAAAGAGTTGGGAACAGTCATGAGGTCTCTTGGACAAAACCCAACAGAGGCTGAGCTTCAGGACATGATCAATGAAGTCGATGCTGACGGAAATGGTACGATCGATTTTGAAGAGTTTCTCAACATGATGTTAAAAAAGATGAAGGACACTGACAGCGAAGAGGAAATCCGCGAGGCATTCCGTGTATTCGATAAAGATGGCAATGGTTTTATCAGCGCTGATGAACTGAGACATGTCATGACAAGCTTAGGAGAGAAACTAACAGATGAGGAAGTCGATGAGATGATCCGAGAGGCTGACATCGATGGTGATGGACAAATCAATTATGATGAATTCGTTAAGATGATGACCAGCAATCAGTAAAGAAATATGGACCTACTGACGTCACGGTTTTTGGAATTGATAGCATGTGCGCATGCGTGAATGGCATCTTTTCTGCTTCACATATAACATAGTGAATGAAATCTTTGCTACAGCTTTCCTTGCTATCCCGCGTAGAGATCCAAAAGAGATGGAGAAGAGAGGAGAGGGAGGGGGATTTTAAACCTCTTTCCTTCCATATTCACTTATCTATTTCTATCTCACCTTTCGATTTTGGACTATCCTGTGTGTGTGTACAACCGTTACCCATCCCTCCACCCTGCGGAGAAAACGAAGCCAAGTTGCTCACCGCGGGGGGGGGGGGGGGGGGATGGGTAATGGCTGTACACATGCCATGCTATTTTTGCGCTTCAGTTGGAACACGGCTACTCTCAGGGGATCCTGTGTTAAAATGGTCGAGTCGACCACAGGAAGCCCGTAGCTTGGTACACTTATATAATGATTTGAAATAAAACGATATCTTTGAATTTTTCACATGCATTTAGGACGAGGTCAAAACAATTGTCCTCGGACTGGATCCGATTTACCAGGTGCATGGTACCCGATACCGGACTCCACCTATTGAGTGAAATCCCGCATTTTCAAATATCTCCAAAACTGACAGCCAAATTACATTAACGAATGTACGGTTTGTTTCAATGTATTCTGTACAATGTATGTCTGTACTGAGAAATAGACACTACAAACACCCAGTATCAAATATTTCAACTAATCCATATTTGGGGGAATGGGGTATTATTCTGTTTCCACCAGCAAAACCAATAAAATCGTGTCTCTACTGGGGACTATATCTTTTGTTGTGACCTCAGCCCCAATACTTAACGGTTATTCTGCAAGATCGCGTTTCGCCCTCGTCGGCTAATTATCCGACGATATCCCGCGAGATCGATCGAGCAGAATAACTGTTTTACTATTCAACAGATTGATAACAAAACACTCTTTTTACCTAAAGTGTACAACTTTAATTCATATAATGATTCTGGCGCATTCTTCATTTTGGATGACATATATCACAGGGTATCTGTCATGTGAAGGCGACAGATATTGCAGTTCACATGCCCATATTTGGGCAATGTATCGATGTGTTGAATAATAATTTCAGAGATGTGAAATACTAGACTGATGCATGGTACCAATTGATTGCTAGCCATATTGAGCAATTTATAACCATTTAGATTTTCACCTACTTTCTGGCCTTGCTAATTATCTTTTCCATGAGGAAAGGCTGGCCAGAATCTCAGCACATTAGGGGACGGGAGGGTAGTTTTCATAGAGGGAATATAATTACTTTGATATCAAAGTTTCATATGGGGCCGGTTTTTGATAGGCGTAGTTTGCTCTTTTCTTGGCAATTGGACTAATTAAATAAAGAGAATAAATCTATCTTGTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0DH95	Calmodulin-1 OS=Arabidopsis thaliana OX=3702 GN=CAM1 PE=1 SV=1
P0DH96	Calmodulin-4 OS=Arabidopsis thaliana OX=3702 GN=CAM4 PE=1 SV=1
P62150	Calmodulin-A (Fragment) OS=Oryzias latipes OX=8090 GN=calm1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000122 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR050145 all species →	Family	Calmodulin and Centrin Calcium-Binding Families	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23050 all species →	CALCIUM BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0030234 all species →	Molecular Function	enzyme regulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02183	CALM; calmodulin	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.