Gene detail

Detailed information of gene27162.t2 in Actinoscyphia liui

Genomic Location: chr8:18815418...18818746
NR annotation: XP_020916936.1, cationic amino acid transporter 2 isoform X3 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene27162.t2

CAGAACCAAAAACATCGAACCGAAAAACGAAAAAAAGAGAAGAAAACATGATTGACTGAACCCTTAAAAAAAGCCGATAAACGCTCACGATGTCATCGTGTGTCCGAGCGCTTGCGAGGAGGAAATTCATCGACACGGAAACGATCGGCAACACAGAGCTGTCACGATGTTTAAGCGTTGTTGACCTGACTGCCCTCGGCATTGGGTCGACTCTCGGTGCTGGAGTGTACGTCGTCGCGGCTGAGATTGCTCGCGATGTGGCCGGCCCGGCGGCGATTATTTCTTTCTTAATAGCGGGCTTCGCGTCTGTACTGTCGGGGCTCTGCTATGCAGAGTTTGGTGCCCGCGTGCCCAAGGCTGGCTCGGCGTACGTGTACAGCTATGTGACCATTGGTGAGATCGTCGCGTTTATAATCGGTTGGAATCTGATTCTAGAATACATGATCGGTGCCGCGGCGATCTCTAGGGCGTGGAGTGCTTATTTTGACTCTATTTTGAACGATAGAATTCGTAACTATGTTGTCCAAAACATTGGAACTATTCAAGTAGGTGGGCTGGGGAACTACCCAGACATTATAGCCTTCTCAATCTGTATGTTAATCACGATGATCCAGCTGACGGGAGTCAAGAAGTCAGCACGCTTCATTGGCATCATTACATGCGTGAACATTGGTGTTATAGCTGTGATTATAGGAGTCGGGGCCACACTTGCCGAGCCTAAAAACTGGGACGACTTCATGCCGTACGGCACCACAGGTGTATTAGCTGGATCCGCTACCGCGTTTTTCGCGTTTGTGGGATTCGATGTGATCGCGACCACGGGCGAAGAAGCAAAAGACCCAAGCAAGTCGATTCCTATTGCGATTGTGATTTCTCTGTTGGTCTGTTTGGTTGCGTATTTTGGAGTGACCGCGGCCATTACGCTAATCGTACCTTACAATGAACTTCAGTTAGGAGCAGCGCTACCGAAGGCGTTTGCCCAGCGCGGGGCTGGGTTTGCTCAGTATGTCATTGCCATTGGCGCGCTCTGCGGCATGACTGCCGCCATCAACGGCGGTCTGTTTCCACTCCCTCGTTTACTCTACGCCATGTCAATCGATGGGTTAATATTCAAGCAGTTTGCCTATATCAGCAAGAGGACTGAAGTCCCTTTAGTAGGGACATTATTCTCGGGGTTGCTGGCAGGGATCCTCGCGATGCTCTTTGAGCTCCAAGAACTCGTAGAAATGATGTCGATAGGAACCTTACAGGCCTATACCATCGTGTCAACCTGTGTCTTAATCCTACGTTACCAGCCGGAGACTGTCGGAATCATATTACCGGATGCACTGATTCCTCTAGACGACGACGAGGACTCAGATCTCCCTCCACAAAAAGATCCGACACCTAAATCGGGCAAAATCGTAAAATACACCGTTGCATTGTTATTTCTTTATTTCTTTATACTAAGTGCGTTTCTAATTTACGGACTGGTTCCGCTGATCGAAGGGGAGCCCTGGGCGGCAGTGTTGGCAGTATTCCTAGGCCTCCTTCTATTGATTGCTGTTGTGCTAATAATTGTTCAGCCGGAGAGTAAAGCCAAGATACCATTTAAGGTTCCCCTTATTCCTTGGCTGCCTTTAGTGTCCATGTTTATCAACATCTACCTTATGATGGAGTTGAGTTCGGTCACGTGGGTGCGATTCTGTATATGGATGACTATTGGTATGTGTATCTATTTCTTTTACGGCATCCACCACAGCGTGGAAGGAGAAAGACAGAAGGAAGAAGGAAACTACATCCCTTTAGAGCAAGTCGACGCAGAGGACCAAAGTGACAACCCTGAGGAACGCCACGAGAAAACGGACGAGGAAGACAAGCCAAAAGAGGAAGATGCTGAAGATAAGAAGGATGAGGAATTTACTAAGGCATCATAATGAACAAGAAGTGTAATCATGTTTCGTTTAGAATGATCGAGGGTTTATCATATAATTTCAAAACTCATAGGACAAAAAAATGTTATGTTGGTAGGCAAACATAGGTTTTCATAAATTTTCATACAAAATTTTGATTTTTGAAAATTCATATCTTCGCAATTTGTGAAGCTATTTTTTCCAAACTTCACATTTTTACAAATTTCAACAAGCTCTTTCCAGCTTTGATAATCATTTTTTTGTGCTATGAGTTTTGAAATGACATGATAAACCCTCATTATTTTGAAGTTGTGACTGATGTCTAGTAGTTTTGACTCGGGTTCAATTCCGGTCTGGGACTCGAATTTTACACTCGATGAAACTCTATACCGACATCGTTACTATTCATTACCGAGTTACATTTCACAGTTCTAGTAATTTAAGTTATTTATTTCCTTTGGAAATCGTGGGTTTTAAGGGAAAAGGTTTACATGGCCTTAATAAGAATGTCTTGTACAGAAATCATAGAGGGGAAGTAACACAGCGTGGCAGTGCGATGTAATAGACTGTGAACAGTTCCTACTTTTTCCCTCCAGACTCAGTCGTATGAGTTTGTAGCTATATGTATCCTGGACGTTTGGGAGTAGATGCGAGTTCTTGTGGAAGAAGAGAGAAAGGCGGGCGTAATTGGTTAGTGCGCTGGTCTTCTAACCAAGAGGTTCGCGGTTCGACTCCCGTTAATTGTTGTGATTCTCGCGCCCTTGTTTCGACTTTACTTTGATCCTTGTAGCTCATTGCAGCTTTAAATACTCATGGGATGGAGCATTGATGGAGGGAGGGGGTAGAGGGTGTACCTTACGCTCTCTGAAAGATCCGCACTTTCGGGTGAAGGGGCACAGACATTAAATAGGGAAGATTTCGTATGACTGTGAAAAAAACACGACACACGGTTACGGGCACGGCACGGAACTTCGAATGTTTTTATGTACATCACGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q09143	High affinity cationic amino acid transporter 1 OS=Mus musculus OX=10090 GN=Slc7a1 PE=1 SV=1
P30823	High affinity cationic amino acid transporter 1 OS=Rattus norvegicus OX=10116 GN=Slc7a1 PE=2 SV=1
P30825	High affinity cationic amino acid transporter 1 OS=Homo sapiens OX=9606 GN=SLC7A1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000351 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13520 all species →	AA_permease_2	Amino acid permease	Family	Interproscan
PF13906 all species →	AA_permease_C	C-terminus of AA_permease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002293 all species →	Family	Amino acid/polyamine transporter I	Interproscan
IPR029485 all species →	Domain	Cationic amino acid transporter, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43243 all species →	INNER MEMBRANE TRANSPORTER YGJI-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006865 all species →	Biological Process	amino acid transport	Interproscan
GO:0015171 all species →	Molecular Function	amino acid transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13864	SLC7A2, ATRC2; solute carrier family 7 (cationic amino acid transporter), member 2	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.