Gene detail

Detailed information of gene27162.t2 in Actinoscyphia liui

Genomic Location: chr8:18815418...18818746
NR annotation: XP_020916936.1, cationic amino acid transporter 2 isoform X3 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene27162.t2

CAGAACCAAAAACATCGAACCGAAAAACGAAAAAAAGAGAAGAAAACATGATTGACTGAACCCTTAAAAAAAGCCGATAAACGCTCACGATGTCATCGTGTGTCCGAGCGCTTGCGAGGAGGAAATTCATCGACACGGAAACGATCGGCAACACAGAGCTGTCACGATGTTTAAGCGTTGTTGACCTGACTGCCCTCGGCATTGGGTCGACTCTCGGTGCTGGAGTGTACGTCGTCGCGGCTGAGATTGCTCGCGATGTGGCCGGCCCGGCGGCGATTATTTCTTTCTTAATAGCGGGCTTCGCGTCTGTACTGTCGGGGCTCTGCTATGCAGAGTTTGGTGCCCGCGTGCCCAAGGCTGGCTCGGCGTACGTGTACAGCTATGTGACCATTGGTGAGATCGTCGCGTTTATAATCGGTTGGAATCTGATTCTAGAATACATGATCGGTGCCGCGGCGATCTCTAGGGCGTGGAGTGCTTATTTTGACTCTATTTTGAACGATAGAATTCGTAACTATGTTGTCCAAAACATTGGAACTATTCAAGTAGGTGGGCTGGGGAACTACCCAGACATTATAGCCTTCTCAATCTGTATGTTAATCACGATGATCCAGCTGACGGGAGTCAAGAAGTCAGCACGCTTCATTGGCATCATTACATGCGTGAACATTGGTGTTATAGCTGTGATTATAGGAGTCGGGGCCACACTTGCCGAGCCTAAAAACTGGGACGACTTCATGCCGTACGGCACCACAGGTGTATTAGCTGGATCCGCTACCGCGTTTTTCGCGTTTGTGGGATTCGATGTGATCGCGACCACGGGCGAAGAAGCAAAAGACCCAAGCAAGTCGATTCCTATTGCGATTGTGATTTCTCTGTTGGTCTGTTTGGTTGCGTATTTTGGAGTGACCGCGGCCATTACGCTAATCGTACCTTACAATGAACTTCAGTTAGGAGCAGCGCTACCGAAGGCGTTTGCCCAGCGCGGGGCTGGGTTTGCTCAGTATGTCATTGCCATTGGCGCGCTCTGCGGCATGACTGCCGCCATCAACGGCGGTCTGTTTCCACTCCCTCGTTTACTCTACGCCATGTCAATCGATGGGTTAATATTCAAGCAGTTTGCCTATATCAGCAAGAGGACTGAAGTCCCTTTAGTAGGGACATTATTCTCGGGGTTGCTGGCAGGGATCCTCGCGATGCTCTTTGAGCTCCAAGAACTCGTAGAAATGATGTCGATAGGAACCTTACAGGCCTATACCATCGTGTCAACCTGTGTCTTAATCCTACGTTACCAGCCGGAGACTGTCGGAATCATATTACCGGATGCACTGATTCCTCTAGACGACGACGAGGACTCAGATCTCCCTCCACAAAAAGATCCGACACCTAAATCGGGCAAAATCGTAAAATACACCGTTGCATTGTTATTTCTTTATTTCTTTATACTAAGTGCGTTTCTAATTTACGGACTGGTTCCGCTGATCGAAGGGGAGCCCTGGGCGGCAGTGTTGGCAGTATTCCTAGGCCTCCTTCTATTGATTGCTGTTGTGCTAATAATTGTTCAGCCGGAGAGTAAAGCCAAGATACCATTTAAGGTTCCCCTTATTCCTTGGCTGCCTTTAGTGTCCATGTTTATCAACATCTACCTTATGATGGAGTTGAGTTCGGTCACGTGGGTGCGATTCTGTATATGGATGACTATTGGTATGTGTATCTATTTCTTTTACGGCATCCACCACAGCGTGGAAGGAGAAAGACAGAAGGAAGAAGGAAACTACATCCCTTTAGAGCAAGTCGACGCAGAGGACCAAAGTGACAACCCTGAGGAACGCCACGAGAAAACGGACGAGGAAGACAAGCCAAAAGAGGAAGATGCTGAAGATAAGAAGGATGAGGAATTTACTAAGGCATCATAATGAACAAGAAGTGTAATCATGTTTCGTTTAGAATGATCGAGGGTTTATCATATAATTTCAAAACTCATAGGACAAAAAAATGTTATGTTGGTAGGCAAACATAGGTTTTCATAAATTTTCATACAAAATTTTGATTTTTGAAAATTCATATCTTCGCAATTTGTGAAGCTATTTTTTCCAAACTTCACATTTTTACAAATTTCAACAAGCTCTTTCCAGCTTTGATAATCATTTTTTTGTGCTATGAGTTTTGAAATGACATGATAAACCCTCATTATTTTGAAGTTGTGACTGATGTCTAGTAGTTTTGACTCGGGTTCAATTCCGGTCTGGGACTCGAATTTTACACTCGATGAAACTCTATACCGACATCGTTACTATTCATTACCGAGTTACATTTCACAGTTCTAGTAATTTAAGTTATTTATTTCCTTTGGAAATCGTGGGTTTTAAGGGAAAAGGTTTACATGGCCTTAATAAGAATGTCTTGTACAGAAATCATAGAGGGGAAGTAACACAGCGTGGCAGTGCGATGTAATAGACTGTGAACAGTTCCTACTTTTTCCCTCCAGACTCAGTCGTATGAGTTTGTAGCTATATGTATCCTGGACGTTTGGGAGTAGATGCGAGTTCTTGTGGAAGAAGAGAGAAAGGCGGGCGTAATTGGTTAGTGCGCTGGTCTTCTAACCAAGAGGTTCGCGGTTCGACTCCCGTTAATTGTTGTGATTCTCGCGCCCTTGTTTCGACTTTACTTTGATCCTTGTAGCTCATTGCAGCTTTAAATACTCATGGGATGGAGCATTGATGGAGGGAGGGGGTAGAGGGTGTACCTTACGCTCTCTGAAAGATCCGCACTTTCGGGTGAAGGGGCACAGACATTAAATAGGGAAGATTTCGTATGACTGTGAAAAAAACACGACACACGGTTACGGGCACGGCACGGAACTTCGAATGTTTTTATGTACATCACGGA

Protein

Uniprot

Uniprot term	Description
Q09143	High affinity cationic amino acid transporter 1 OS=Mus musculus OX=10090 GN=Slc7a1 PE=1 SV=1
P30823	High affinity cationic amino acid transporter 1 OS=Rattus norvegicus OX=10116 GN=Slc7a1 PE=2 SV=1
P30825	High affinity cationic amino acid transporter 1 OS=Homo sapiens OX=9606 GN=SLC7A1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13520	AA_permease_2	Amino acid permease	Family	Interproscan
PF13906	AA_permease_C	C-terminus of AA_permease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002293	Family	Amino acid/polyamine transporter I	Interproscan
IPR029485	Domain	Cationic amino acid transporter, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43243	INNER MEMBRANE TRANSPORTER YGJI-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006865	Biological Process	amino acid transport	Interproscan
GO:0015171	Molecular Function	amino acid transmembrane transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13864	SLC7A2, ATRC2; solute carrier family 7 (cationic amino acid transporter), member 2	-	Transporters	ko02000	deepkoala