Gene detail

Detailed information of gene27166.t1 in Actinoscyphia liui

Genomic Location: chr8:18870832...18884266
NR annotation: XP_020895295.1, glyceraldehyde-3-phosphate dehydrogenase 2 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene27166.t1

GCGAAGTCGTCTGCCAATTGCCACATCTATTGTGCCTGGCGTTCCGAGGCGGCTGTTGATCAACGTACCGGTACTCCAAGCTCCTGATTCGTGCACTGGGGACTCGACCGCCGAACCTGTACTAGGAAAAGTTCTTATCATTGTTCAAAATGCCTATCAAGATTGCAGTCAATGGATTCGGCCGAATTGGGAAATTAGTGACTCGTGTGGCTTTAGGGCGAGATGACACGCAGGTTGTTGCCCTCAATGATCCTTTCATGGATGCTCGTCAAATGGCATTTTTGCTTAAATATGACTCCACCCACGGAAGAGAATTAACGGCGACCATTGAAGAAAAAGATGGGAAATTATACATTGATGGTAACGAGGTGGCCGTTTACTCGTTCAAAGACCCTTCCAAAATCCCATGGGAGGATCACAACTTGGATTTTGTGATCGAGTGTTCTGGAATCACCACCTATGAACAAGTGAGCATGCATTTGAAGCAAGGCGCCAAGAAGGTCATCATTGCAGCCCCGTCTGCGGATGTGCCCATGTTTGTCATGGGGGTGAATCATCATAAATATGACCCGAGTATGAAGATTGTGAGCAATGCATCGTGCACCACCAATTGTCTTGCTCCTCTGGCTAAAGTACTCCATGAGAACTTTGGAATCGTAGAAGGGTTGATATCTTCCATCCATGCTTGCACCCAGACACAGCCTACATTGGACGGAGTCTGTGAAAAGAAATCAATTCGTGAAGGGCGAGGTGCTTATCAAAATATAATCCCAACTTTTACAAAAGCAGCAAAAGCCATTGGCAGGGTTCTGCCTGAATTGGATGGCAAGTTATCTGGAATAGCTTACCGTGTCCCTGTAGCTGATGTCTCTGTTATGGACTTCACTGTACGCTTAGAAAAATCAACCTCTATGGAAGAAATCAAAAGAGTAGTAAAGAAAGCCTCGGAGAATGAGTTCAAGGGTTACCTTGGTTACACAGAAGATCCCGTTGTCTCTAGCGATTTCATTGGTTGTAAAATCACGAGTACTTTTGATGCCAATGCAGGCATGGAGTTGAATGAAAATTTCTTCAAACTTTTATCCTGGTACGACAATGAATATGGATATTCCAACCGAGTTGTAGAGTTAATGGCGTTCGTATACTCACGAGATAAGGAACAATAATCAACGCAATGCAACCAATTAATATCAAGTCTTCATACAAGAAATTATTGCAGTTTGAAAAGCGTTGTCGTTCAAAAACTTGAGTTATTCTGAAACTCGAAAAGGATCATGGGTATTAGTAGCGTGATCCCTCTTACAAATTTGAAATTATTGCTGTTTGAAAAGCGTTGCCATCTTTCGAAACTCGAAAATGATCATGGGTATATTTGCCTGATTCCTCTTACATATTTGAAATGTCCTTTGAGATTACCCATAATCCCTTTCGATGTACTTGCTTTATTTTGAGTTTCTTCTGTCAACGTTTTAAAAACAGCTGTATCTATAGTCAATGTTATCCTCCTCCTCAAGCACCCCCTACTGGGATCCCTTTATATTTAGGCCGGGGGAGACTGGGCTCTTCCTCAGTTCTTCCACAGGGATCCCAATGACAGTTGCCTGCGGAGGCTAGGAAGCTAAATCACAATTATTGCAGCTGGAACTCGATACTCTTATTATAGTTTTATAGACTTTGTTTGGATTACTCTTTACTGGAATTCTCAATGTTATGCACTTCTACAAGAACATAGATCCCAAAGTAAAACACAAAACTGAACAAAGGTACATTTTCGATATTGAAAGCCTCTGTTTTCACTGTTTATAAGTAATACCATGGCAAGAGTACCCTGGGTTCCAGAGGTTGTCTCACGTTACGCTTTTGTTAATAATTAGACGTTGTTAGAACTCACGCTCGACAAACCTCTGGAAACTTTGGCCTGGTTTTACAGTTCTCGTTGGACCTCGAACCCATTTGATTGACGCAGGCTAAGCCAATAGAATGGAAGAATGATCTATCTGTTCACGTGTACGAGGTCAAGGTTTATTAACTAACCATGATATTGACCAATAGTAGCCATTGTAAGAACTCGATAACAGTACTAATCATAACTATTACAATTTCCTCTAATCTGATTGGTTGAGAGACTGTCCTATTTTAGCATTAATAGGACAGTTGTAATCGGACAGTTACAAGAGCCAATCACATTACACCTTTCAAGTGAAATGCGCGCGCTATCACGCAATCGCTACGCCATCGAGCGCGTGCTCAAGTGATTTTTCACTAACGTTTCTTGCTTTTTCACTAAAATATGTCATTGATTTTGGTCATTTTTACTGGCTAGCATTGCTTATCATGAAAATCTTTTTCTCGGAAATTGTAATAGTTATGATTAATTGGTAACAGGACTTTGTGTCGTCCAATTCTGTCTGAAATCATACTCATGATAAACAAATCAGACTCCCGCTGCGCGGTCGTCCGATTTTGTAATCACTCGTATGATTACAGACCGAATTGGACTCCACTCAGTCCTATTACCATTATTCAATCAGCGGCCGTAGTCCAGAACGCGGACTAGATCGATATAAACAGCTTTTCTATTGGGTCGGTTAGATCAGTCAACCAGGCCAAAGTTTCCACAGGTTTGTCGAGCGTGAGTTCTAACGTCTAATTATTAACAAAAGCGTAACGTGAGACAACCTCTGGAACCCAGGGTATGGCAAGAGGGAAATTAGTGATTCAATTTCCCGCAAGGCGAGGGCGGCGTCGGGACTTCCACAATTACAAAGTCTCCGAGGCTAAGGGAGAATTAATCACTAATTTCCCGAAGTGTCACGGCATTACTTTGTAATACCATGACTCGCCGAGGAAGTGAAAACGTTTTTATGAGGAGGACACAGGACAAGTTGGCTAGCTGACTGTCATGGACCAGTAATCATCACTAGCGACACTTCACGGGCATGGCTCCAGGAGGCACCAAGCTCGAATAATTATTAGAATATGAAGTAATTAATATTCATGTTTCAAGCGTTGTCTGTTTATTTCAAACTAGCTATAGCGCTCTGGCCAATATGGCGGAATGAGTATACGCACAATGAAATGATCCATGGAACCATGATCCCACATGGTTCATAGCGTATGGTCATTACAAGAGGTCTCTTGAGAGAACATTAAGGGTCGGATAAAAGGTACCCTCCCCTCCAGTGCTGGTACTTGATCCAACCCAGAAGGGAGACATGCAATCTGTCTCTCTTCTCCAATTTTCCGGCCGGGAAAATTAGCGAGACAATGGCTTTTTCCATAGAAGGGAGATTTAGGACCCGTCCACACGTATACGTTGACATTCGTAAATGCATATTTTTTTTAGACTGCAGTCATTCTTTCAAAGTCTGATGCAATGCATTTTTTGTTTAGTGAAACCATGAATAAACCGCTTTAACGGGAGATATTTTTGTCATGTCATTTGCGTAGTTTAAACTTGTTAATGAAATTGTTCTACATAAAATCAAGACGGTAGGATACGATTTTTATCACCTCCCTCAAAAAAAAATCTTTCTACGAAAAAAAAGTCCGCCAGAAAATTTCTAACCCCCAAAAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q05025	Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix japonica OX=93934 GN=GAPDH PE=2 SV=2
P04797	Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus OX=10116 GN=Gapdh PE=1 SV=3
P16858	Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus OX=10090 GN=Gapdh PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002622 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00044 all species →	Gp_dh_N	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	Domain	Interproscan
PF02800 all species →	Gp_dh_C	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006424 all species →	Family	Glyceraldehyde-3-phosphate dehydrogenase, type I	Interproscan
IPR020831 all species →	Family	Glyceraldehyde/Erythrose phosphate dehydrogenase family	Interproscan
IPR020828 all species →	Domain	Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain	Interproscan
IPR020829 all species →	Domain	Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR020830 all species →	Active_site	Glyceraldehyde 3-phosphate dehydrogenase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10836 all species →	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006006 all species →	Biological Process	glucose metabolic process	Interproscan
GO:0016620 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00134	GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)	EC:1.2.1.12	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.