Gene detail

Detailed information of gene27221.t2 in Actinoscyphia liui

Genomic Location: chr8:19645118...19657840
NR annotation: XP_028517545.1, msx2-interacting protein [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene27221.t2

ATGGTTCGGGAAACGCGTCATCTGTGGGTTGGAAATCTTCCGGAAAATATTCGCGAGGAAGAAATCGTGAAATATTTCACAAGGTACGGAAGAGTCGAAAGCGTGAAAATTCTTCCAAAGCGAAGCTCGGAGGGTGGTCGGGCTTCTTTCGTCGATTTTGTGGACATCCGAAGTGCTACGAAAGCTCACGAATCTGTGAATCGAATTGGAGATCGTGAATTGAGGACAGACTACAATGAGCCTTCCAGCACAAATCAGACTACTATCACAACCCGGGTACATGATCCGACAGCACGTCCAGTGGACCGTCCAGTGAGTGGGCCTCCACCATCACCCCCTAGGGGGAGGAGATATGAACGAAGAGGAGAGGGTGTCATTCCAAAAGCTGGAGTTACTGAGAGCCGATATGGGAGTCGTCCCTATGCATATGAAGGTTTCAGTGACGAAGAAAATAATACAAGAGGAGACAGAAGTACTAGCAGTGGTGCTCGATATCCGTCGGGTAGCCAGAAAGGTTACATACGCAGTGGCGACGTTACTTCTAGCACTGAAGCACAGAAGGGATCAACTGGAAAATATGAATCTTACAACAGCCGAGGTGGCAGCCCTGAAAATTCAAGCGACAGTGAAAGCGATAGCAGTGAGGGCCACAGTGCGACGCAGTCTGGTAGCTCTTCAAGTGGAAGCAGTAGTGAAGATGAGAGTGAGGCAGAGAGTAGAAGTGCTTCTCCAGCATCACAGACTTCAAAAAGTAACAAGACTTCCTCACTGTGTGTTAAGAATCTCTCTACTAGATCAAGTGATGGCAGCATTAGAGAAGGATTGTATCATGAATTTAAGAAACATGGCGAAGTCACTCGTATTTATGTACAGGGAACTGGTGCTAATCGTTCCGCAATTATCTATTTTAGAAGACCTGATGAATCTGAACGTGCTATGGAAGTGTGCCAAGGTAAAATGTTCCTTGGAGCAGAAATGCACATACAGCCATGGAATGCCCCTCCAGAAAAAGGTGATCGTTACGATAACAACGACTTCCCGCCCCGTTTTCGTGCAAGTGGGACACCTCAGTTCACTGACGATGACTTTGACCCATGTTGCACTAGAACTCTGTTTGTTGGTAACATTGAGAAATCAACAACTTATGGAGACTTGAAAGAAGCCTTTGAACGCTTTGGTGAAGTTATTGATGTCGACATTAAGAAACAGCCTGGTAACAACCCATATTCTTTCATCCAATTTGCTGATCTTACAAGTGCAATCCAAGCAAGACGACGAATGGACAGAGAATTCATTGGACGCAATCGAGTCAAGGTTGGGTTTGGTAAAGTGGCCCCTATCAACACCATCTGGATAGGTGGGGTCACAGCAAGCCTCAGTGAACAGCAATTGGACAGACACTTTGGTCGTTATGGGCGTGTTACAAGAGTGGTCATTCATCGTAACATTAATCAATCACTGGTTAGCTTTGATAGTGTGGAGTCTGCTGGTATAGCGCAAGCACAGATGAAAGGGCGAAGCCTGTTTGGCAGGCGTGTCAGGGTAGAAATGGTCAGTCGTGACAGTCGCCAACTCTTTTACGACAGTCTACAAAGAGTAGGACAACCAGACAGCACCAATAATAGCAGTAGCCGTCGCTACGATTCCTCGCCTCCAGATCGCACGCGAGGTCGTACCGGAGGGCCAGGGTACTTTGAAAACCGACGGGGCAACAACCGTGGGGGGATGGCACGACCCGGTATGAGACGAGACACACGGGGATACAGATCATCGTGGCATCAACGCTCCGACTACGCCGATAATTATAACGCCGAGGGTCAGGGATATCACCACGAACCCCGCCCCCCCCGGGGACCCTTCGAGGGGGGTCGCGAGTTTGAAGGCGACGACTATGACCAAGAGCTTAAAGACTACAACTACAGGCGTCAACGCGAAAGAGAGAGGGAACGCGAGAGGGAGGACCGTCACGACAGGGCTCCTCGCGACCGCCACGAAGGGGAATACAGTGATGCAGAAAGGTACTACCCTGAGAGGCACAGCCGCTGGCAAGGGGAAGAGAGTAGCTCAGGCTCGTATGAAGACGAAACACGTGACCATCGACGTAAGAACCAGGACTACCCTGACAAACGTGGCCGTAATAATTACAGCGAGGAACGTGAAGGAGTGTCGTCGGATAACAAGTCTGAGTCAAATGAGGATCGACTTCGAAGGAAAAAACGAAGTGAGAAGAAAAAGAAAAGACCAAGAAATTCTGAGGAAAGAGAGGAGGAAGAAGACGAAGAGGAAGATGTCCAAAAGAAGCGTAAAAAACCTAAAGTTGAAGCTGATTCTCGCATTGAAGAAGTAATCCCGCCTCGTCAAGCGAAGGACGGAGAGGAAGTCAAAGGCCGTGCGAATGAGAAAACCAAGAAGAAACCAGAGGTGGAAGTTCCTGCCCCACCTCAAGAAGAACCACCTCCCCCGACTGAAAAGAAAAAGAAAGAGAAAAAAGAGAAGAAAGAAAAGGAAAAAGAAAAGCGAAAGAAACATGTACGCACGTCGGTGGAAGAGCCTAGCGAGAGAGAACATGTGGTAGAAGAAACCACGAACGAACGGATTTCTGAGAAGATAGAGAAAGCAAGAAATTTAGAATCACTTCCAGTCCAATCTGAACCGGAAGTAGAAAAGAGGCCTTCTGAGAATCATAAGATGCCAAAGAGCCCAGAAAACGACAATAACGATGTGGGCAGCGAGGACGTGAAGCCAAGACGGGCAACGGAAGAACGACTTTCCCGAGAGGACAGAGAGTACGCTCGTTCGCCAGGTGGCTCACCGAGAAAATCCCACCGAGACGACAAGCGAAGAGAAATGAATGATCTTGAAAACGGGATTTCAAAACGAAGGCGCAAGTCACACGAAGACTCACCACCCCCTCCCCCACCGCCACCTCCACCACCTCCACCCCCAGAGGATTCAATTCCTGTGACAACAGAAAGTAACAGAGTTGCATTACCGGAGAGTAGACCAAGTCAACCAATCATACGTGCACCCTACGATTCCGTAGGCCCATCCCCGGTACGTGTTGACGTGTCGTACGATATGTCTCCACATAGTAGAACTCCGGTGGCTACACCCCCGGGGATTGGAGTATTACCAGGAATCAAGCATCCACTGCCATCCACTCCACCCGTGGCAGTAGCGTCCCCGTTAGGGTTACCGCCCGAACCTCACATTGGTGTACCCATAGCAACACCCTCGCCTACGACCGTACCGCCTCCACCTCCGATCCAGAACTACACCCCGCCACCACCATCCAACCAGCCCGCCAATGCGGACACCCTACTGGAACTACTACGTCGCTACCCGGTAGTCTGGCAAGGAATGGTAGCACTCAAGAATGATTCCGCTGCAGTTCAAATGCACTATTTATCAGGGAATGTCAGGTTGGCAGAGATATCGTTACCCCAGCCTCCTGTACCGCAAACCATACCACCTCTTCCTCCACCGCCATTACGAATCGCTCAGCGTATGAGACTGGAGCCATCACAGCTGGAAGGAGTGGTCAGGAGGATGCAGAGCGAGAATGAACATTGTCTCCTGCTGGCTCTTCCATGTGGGAGGGACCCACTAGATGTACACACACAGACACGCGCACTCAAGAATGGCTTCATTACATACCTACAACAGAAGCAAGCTGCCGGCATTATCAATGTCGCTAGACCAGGAAGCGCTCAGCCGAGCTTTGTTCTCCATATTTTCCCTCCCTGTGAGTTCACCCAAGAACACTTGGCACGAGTCTCCCCAGACCTTCTCGACAGTGCGGCCGATAGCGGCCATCTGATGGTGGTAGTGGCCTCGGTTTGA

Transcript

gene27221.t2

AAGTTATGCTCGAGTTTGAACTATTTTAAACCCAAGTTTACTTCAAAGTAATTGACCTTATGGAAGCATTCTTCACATGAATCAGGACTACAGTATATATTCTTGAGTACTAATTAAGTTTTCCGGTGAAAATGGTTCGGGAAACGCGTCATCTGTGGGTTGGAAATCTTCCGGAAAATATTCGCGAGGAAGAAATCGTGAAATATTTCACAAGGTACGGAAGAGTCGAAAGCGTGAAAATTCTTCCAAAGCGAAGCTCGGAGGGTGGTCGGGCTTCTTTCGTCGATTTTGTGGACATCCGAAGTGCTACGAAAGCTCACGAATCTGTGAATCGAATTGGAGATCGTGAATTGAGGACAGACTACAATGAGCCTTCCAGCACAAATCAGACTACTATCACAACCCGGGTACATGATCCGACAGCACGTCCAGTGGACCGTCCAGTGAGTGGGCCTCCACCATCACCCCCTAGGGGGAGGAGATATGAACGAAGAGGAGAGGGTGTCATTCCAAAAGCTGGAGTTACTGAGAGCCGATATGGGAGTCGTCCCTATGCATATGAAGGTTTCAGTGACGAAGAAAATAATACAAGAGGAGACAGAAGTACTAGCAGTGGTGCTCGATATCCGTCGGGTAGCCAGAAAGGTTACATACGCAGTGGCGACGTTACTTCTAGCACTGAAGCACAGAAGGGATCAACTGGAAAATATGAATCTTACAACAGCCGAGGTGGCAGCCCTGAAAATTCAAGCGACAGTGAAAGCGATAGCAGTGAGGGCCACAGTGCGACGCAGTCTGGTAGCTCTTCAAGTGGAAGCAGTAGTGAAGATGAGAGTGAGGCAGAGAGTAGAAGTGCTTCTCCAGCATCACAGACTTCAAAAAGTAACAAGACTTCCTCACTGTGTGTTAAGAATCTCTCTACTAGATCAAGTGATGGCAGCATTAGAGAAGGATTGTATCATGAATTTAAGAAACATGGCGAAGTCACTCGTATTTATGTACAGGGAACTGGTGCTAATCGTTCCGCAATTATCTATTTTAGAAGACCTGATGAATCTGAACGTGCTATGGAAGTGTGCCAAGGTAAAATGTTCCTTGGAGCAGAAATGCACATACAGCCATGGAATGCCCCTCCAGAAAAAGGTGATCGTTACGATAACAACGACTTCCCGCCCCGTTTTCGTGCAAGTGGGACACCTCAGTTCACTGACGATGACTTTGACCCATGTTGCACTAGAACTCTGTTTGTTGGTAACATTGAGAAATCAACAACTTATGGAGACTTGAAAGAAGCCTTTGAACGCTTTGGTGAAGTTATTGATGTCGACATTAAGAAACAGCCTGGTAACAACCCATATTCTTTCATCCAATTTGCTGATCTTACAAGTGCAATCCAAGCAAGACGACGAATGGACAGAGAATTCATTGGACGCAATCGAGTCAAGGTTGGGTTTGGTAAAGTGGCCCCTATCAACACCATCTGGATAGGTGGGGTCACAGCAAGCCTCAGTGAACAGCAATTGGACAGACACTTTGGTCGTTATGGGCGTGTTACAAGAGTGGTCATTCATCGTAACATTAATCAATCACTGGTTAGCTTTGATAGTGTGGAGTCTGCTGGTATAGCGCAAGCACAGATGAAAGGGCGAAGCCTGTTTGGCAGGCGTGTCAGGGTAGAAATGGTCAGTCGTGACAGTCGCCAACTCTTTTACGACAGTCTACAAAGAGTAGGACAACCAGACAGCACCAATAATAGCAGTAGCCGTCGCTACGATTCCTCGCCTCCAGATCGCACGCGAGGTCGTACCGGAGGGCCAGGGTACTTTGAAAACCGACGGGGCAACAACCGTGGGGGGATGGCACGACCCGGTATGAGACGAGACACACGGGGATACAGATCATCGTGGCATCAACGCTCCGACTACGCCGATAATTATAACGCCGAGGGTCAGGGATATCACCACGAACCCCGCCCCCCCCGGGGACCCTTCGAGGGGGGTCGCGAGTTTGAAGGCGACGACTATGACCAAGAGCTTAAAGACTACAACTACAGGCGTCAACGCGAAAGAGAGAGGGAACGCGAGAGGGAGGACCGTCACGACAGGGCTCCTCGCGACCGCCACGAAGGGGAATACAGTGATGCAGAAAGGTACTACCCTGAGAGGCACAGCCGCTGGCAAGGGGAAGAGAGTAGCTCAGGCTCGTATGAAGACGAAACACGTGACCATCGACGTAAGAACCAGGACTACCCTGACAAACGTGGCCGTAATAATTACAGCGAGGAACGTGAAGGAGTGTCGTCGGATAACAAGTCTGAGTCAAATGAGGATCGACTTCGAAGGAAAAAACGAAGTGAGAAGAAAAAGAAAAGACCAAGAAATTCTGAGGAAAGAGAGGAGGAAGAAGACGAAGAGGAAGATGTCCAAAAGAAGCGTAAAAAACCTAAAGTTGAAGCTGATTCTCGCATTGAAGAAGTAATCCCGCCTCGTCAAGCGAAGGACGGAGAGGAAGTCAAAGGCCGTGCGAATGAGAAAACCAAGAAGAAACCAGAGGTGGAAGTTCCTGCCCCACCTCAAGAAGAACCACCTCCCCCGACTGAAAAGAAAAAGAAAGAGAAAAAAGAGAAGAAAGAAAAGGAAAAAGAAAAGCGAAAGAAACATGTACGCACGTCGGTGGAAGAGCCTAGCGAGAGAGAACATGTGGTAGAAGAAACCACGAACGAACGGATTTCTGAGAAGATAGAGAAAGCAAGAAATTTAGAATCACTTCCAGTCCAATCTGAACCGGAAGTAGAAAAGAGGCCTTCTGAGAATCATAAGATGCCAAAGAGCCCAGAAAACGACAATAACGATGTGGGCAGCGAGGACGTGAAGCCAAGACGGGCAACGGAAGAACGACTTTCCCGAGAGGACAGAGAGTACGCTCGTTCGCCAGGTGGCTCACCGAGAAAATCCCACCGAGACGACAAGCGAAGAGAAATGAATGATCTTGAAAACGGGATTTCAAAACGAAGGCGCAAGTCACACGAAGACTCACCACCCCCTCCCCCACCGCCACCTCCACCACCTCCACCCCCAGAGGATTCAATTCCTGTGACAACAGAAAGTAACAGAGTTGCATTACCGGAGAGTAGACCAAGTCAACCAATCATACGTGCACCCTACGATTCCGTAGGCCCATCCCCGGTACGTGTTGACGTGTCGTACGATATGTCTCCACATAGTAGAACTCCGGTGGCTACACCCCCGGGGATTGGAGTATTACCAGGAATCAAGCATCCACTGCCATCCACTCCACCCGTGGCAGTAGCGTCCCCGTTAGGGTTACCGCCCGAACCTCACATTGGTGTACCCATAGCAACACCCTCGCCTACGACCGTACCGCCTCCACCTCCGATCCAGAACTACACCCCGCCACCACCATCCAACCAGCCCGCCAATGCGGACACCCTACTGGAACTACTACGTCGCTACCCGGTAGTCTGGCAAGGAATGGTAGCACTCAAGAATGATTCCGCTGCAGTTCAAATGCACTATTTATCAGGGAATGTCAGGTTGGCAGAGATATCGTTACCCCAGCCTCCTGTACCGCAAACCATACCACCTCTTCCTCCACCGCCATTACGAATCGCTCAGCGTATGAGACTGGAGCCATCACAGCTGGAAGGAGTGGTCAGGAGGATGCAGAGCGAGAATGAACATTGTCTCCTGCTGGCTCTTCCATGTGGGAGGGACCCACTAGATGTACACACACAGACACGCGCACTCAAGAATGGCTTCATTACATACCTACAACAGAAGCAAGCTGCCGGCATTATCAATGTCGCTAGACCAGGAAGCGCTCAGCCGAGCTTTGTTCTCCATATTTTCCCTCCCTGTGAGTTCACCCAAGAACACTTGGCACGAGTCTCCCCAGACCTTCTCGACAGTGCGGCCGATAGCGGCCATCTGATGGTGGTAGTGGCCTCGGTTTGAGTGGCACAACTCAGACAAGAGAAATAAAATTATAGACAATAAGTCCCAAATGTGGATAGATACTTTGGGATGTAGAAGAAGAGTCTCCCCTCCCTTTCTGATGATAGGAATTTGAATCTAGAAATAGGTCTAGATTTCCAGAAGTGAAGTCAGAATTTTAATCGTTCTGCAATCGTCATTGAAATAATTTTAACTCGACTTTTTAAATGTCTGATGTTTTCCTGCAAAAGATGCACCCCTCCTAGTCGACCACTCCCTTCTTTGCCTGCGACTTCAAAGCATGCAATGTGGTTTTCATTCGATTACATCTTAGTTCTATAAAGTTCCTTCTCCCAATAGCGCCTGTGCCATAGACAGATTTGATAATAGTCTATAAAATGTTCAAAATAGTCTGTCAAATAGTTTGATAGAACACTTGATCGAATACATGATCGAAATGACCCGATCGAATAAATGATCGAACTTGCTCTATTGAATCAGTGATCAAAGTTGATCTTTCGAATACATAATCGCTTACTGTCGATACTAGGAAAACAATCAATAGAATAAAACAATTAAAAAAAAAAATACGTCCAATATAATTTATTAACGCAAAAAAAATCTGGCACAGTGTAGCGGAGATTTCCTGAGATTGTATCGACCTCACTAGATTTCAATGTGTAAGTGGTTAGAATGATAATCAGAAAGAAACCATTAGAGTGCAATTTAGAAAAGCGTGAAAACTAAATCACTAATTAGTACTAAATAGCATTAATGAAACAATAGAAATAACACTATTTAAAGTTAGTACTATTTCACGCTTTTCTAAATTGCACTCTACTAGAACTATAGAAAAAGTAGTATTTGTAGTTGTGAATTAAACAATATGAAATAAAGTCTTGACAGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96T58	Msx2-interacting protein OS=Homo sapiens OX=9606 GN=SPEN PE=1 SV=1
Q62504	Msx2-interacting protein OS=Mus musculus OX=10090 GN=Spen PE=1 SV=2
Q8SX83	Protein split ends OS=Drosophila melanogaster OX=7227 GN=spen PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002806 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF07744 all species →	SPOC	SPOC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR010912 all species →	Domain	Spen paralogue/orthologue C-terminal, metazoa	Interproscan
IPR034174 all species →	Domain	SHARP, RNA recognition motif 3	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR016194 all species →	Homologous_superfamily	SPOC-like, C-terminal domain superfamily	Interproscan
IPR034172 all species →	Domain	SHARP, RNA recognition motif 1	Interproscan
IPR012921 all species →	Domain	Spen paralogue and orthologue SPOC, C-terminal	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23189 all species →	RNA RECOGNITION MOTIF-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene27221.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.