Gene detail

Detailed information of gene27251.t1 in Actinoscyphia liui

Genomic Location: chr8:20091737...20106885
NR annotation: XP_020900443.1, nucleolar complex protein 2 homolog [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene27251.t1

ATGGCGGACGGCATGGCATCGAAAAAGAAGAGGCGACTAGCTGACATGGATGCAGACGAATTCATGCAACATGGCTTCGACAGTGATTTGAGCGAAGATGAAGACAACGCGACAACCCAACCAAAGAAAGATGCATCGCAAAAGGCAAATTCTAGAACTTCAACCCACAAAAAACAGCTTTCCACGCTTCAAGAAAAGGACCCAGAGTTTTTTAAATTTCTTAAAGAGAACGATGAAGAGTTGTTACAATTCAATGACTCAGACACTGATGAAGAGTTAGAAGAGGAGAGTCCTAATGATGATGATGATGAAAAGAATGATATTGATGCCAATGATGATGGGGATGACACTACCTTGAAGGTCAACAAAAAAGATAACGATGAGTACTTGGCCGAAAATGAAACGGAAGAACATGAGAAACAGGATGAGAAGGAAAGTAAACTTGTTACCATGGAGATGGTGAAACATTGGCAAAAGGAGTTAGAGAAAATGTCATTACATGGCTTGCGGCAAGTGTTAAAAGCCTTCAGAGCAGCAGTGTATGGTTTATTAGATGATGGCACAAATGAAGAAAAGGGACCTAAACATTTTACATACAAAGTTGAAGGGGATACAGTTTTTAATGCTCTTGTTCAGCTTTGTCTGAAACATGTTTTTGTCATACTGAGTCATCACATTGGAGGCTCATCTATTAAATATGGCAAAGTAACTCTTCCATCTTCAAACAAGAATTGGAGTCAAGTCAAAACTCACCTCAAGTTCTACCTCAATGATCTACTTCAGCTGCTACGAACACTTGCAGAGCCATCTATGCTGTGTGTCATGTTAAAACACGCTCAGCAATTATCACCGTACTTTGCTTGTTATCAACAAATAGCTAAAAAGTACATAAAGAGATTGATTCGAATGTGGGGCACTGGTAATGAACATGTCCGTGTGATGGCTTTCCTTGGAATCAGTAAAATGTTGACTTTACTGCCTACAGGTCTGGTAGAATATACTGTTAAGGAATTGTACATGAGTTTTGTGAAGAATACCAAGTTCACATCACCCAAGACCAGGCCGCTCATAACCTTTATGCAAAACTCCCTAGTTGAAGTATTTAGAACAGATCCCAACATGACGTATCAACATGCATTTGTGTACATCAGGCAGTTGGCTATTCACTTGCGGAATGCAATAATTCACAAGAAAAAGGATTCCTACCAGTCAGTGTATAACTGGCAATATATTCACTGTGTCCATCTATGGTGTCGAGTCCTCAGCGAGGTGCCGTCACAAGGGATACTGGATCCACTAATTTATCCATTAGTACAAGTCACTCTTGGAGCCATTAAGTTGATGTCTACAGCTAGGTATTATCCTCTCAGATTTCACTGTATTCGATCTCTTAATCAACTATCTAAAGCTACCAATACTTATATTCCAGTAGCGCCATTTCTCTTAGAGATTTTACAGTCAGAATTCAACAAGAAAATCAAAATGTCAACGGCCAAACCTCTGGACTTCTCGTGTATTCTAAAAGTTTCCAAGTCTTCACTACACACTAAACCCTTTGAGGATGCTGTTATTGATAATATATTTGAGCTTTCTCTGGAGTATTTCTCCATCCATGCTCACTCCATAGCCTTTCCTGAGATTGTTCTGCCATCAGTCATCAGGCTAAGAAAATTCATCAAAACGACTCCAATTCCAAAATACAGAAAGCAAATGAAGCAACTTCTAGAAAAGATCGAGGAGACGTCGAAGGAAGTTACAGAACATCGCTCCTCTGTCACATTTAGTCCCAAAGACATTAAACAAGTGGAATCGTGGACAGCGCAGTACAAACAGCAACCTAACGCCATAGTGAAGTATCACAACACATGGAAATCAATAAAACCAGTAGTTCAAAGTACACAGGAAGAAGAAGTACAAAACGAAGGATCAGATGGCGAAGACGAACAACCAAAGCCAAAGCGACAAAGGAAAATCAGAAAAAAATTTAGGAACCAGAAACAAAATGGCGCCAAAGCCGGTGATGGAGCGGAAGGCGAAGATATTGTCGAAGATTTTCAATTTTCAGACGACGAAGACTAG

Transcript

gene27251.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WV70	Nucleolar complex protein 2 homolog OS=Mus musculus OX=10090 GN=Noc2l PE=1 SV=2
Q3SYU1	Nucleolar complex protein 2 homolog OS=Bos taurus OX=9913 GN=NOC2L PE=2 SV=1
Q9Y3T9	Nucleolar complex protein 2 homolog OS=Homo sapiens OX=9606 GN=NOC2L PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003731 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03715 all species →	Noc2	Noc2p family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005343 all species →	Family	Nucleolar complex protein 2	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12687 all species →	NUCLEOLAR COMPLEX 2 AND RAD4-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030690 all species →	Cellular Component	Noc1p-Noc2p complex	Interproscan
GO:0030691 all species →	Cellular Component	Noc2p-Noc3p complex	Interproscan
GO:0042273 all species →	Biological Process	ribosomal large subunit biogenesis	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14833	NOC2; nucleolar complex protein 2	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.