Gene detail

Detailed information of gene27273.t1 in Actinoscyphia liui

Genomic Location: chr8:20497560...20505940
NR annotation: XP_020900450.1, forkhead box protein J3 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene27273.t1

TGGCGGACCTAAATAGTAGTCTTACAGCCATGGACTGGCTGCCTAAGCTCAGTGTAGGCACAGCACTGAGCGGTCAACTCGTTAAAAGCAATAACAACAACGAAGCTTGTAAGGACAAGCTGGGCCTACGAAAAATCACCGGCTCGCCGCTCGACCCTGGAGCCATTCTGGACGAAACGGAGGCCAAACAGCACCAAGCTCGAGAGAGTAAGCCGCCGTATTCTTACGCTAATCTCATCACCTTCGCGATCAATAGCTCGCCTAAGAAGAAGATGACTTTAAGCGAGATTTACCAGTGGATTTGTGATCATTTCCCGTATTATAAAGACGCTGGCAATGGCTGGAAGAATTCCATACGACATAATTTGTCTCTCAATAAGTGCTTTATGAAGGTCCCTCGAAGTAAAGATGATCCAGGGAAGGGTTCTTATTGGGCGATCGATCAAAATCCACAAGAAGAAACTATTCCTTTGAGACAGAACAGAAAGAGAAAACCAAGCGATTCCCGGATGTCACCCTATGGTCCAGAGGAGCTATCTCCATCAAGCAGTCAAGGGTCAAACCCATGTACCCCAGCATCACAATCCCCTACCCTTGCATCACTGCAGATGGATCCATTCTACGGATCCTCACAATCCAGTCAGGGATTCTTAGGGATATCTCCATCGTCATCAGCCAACATGAGTCAAACGGGTGGTCTCCATAGACCGAGCGATTTAAATAATTCAAATAATTTTGGAGAACCGCCACACAAGATCTTTCCTGAAGTTGCATTTGAGGATCTTAGTGCATCTTTCAAGAACTTGTACAAGTCTGTTTTTGATGCTTCGCAGAGTGGGGGAACATGTGGAAGCAATGATCCATCAATGAATCAAAACCTCTCTACATCTAGTGTACCAAACAACCAGCAGCAATTCATCATGCAAAACATGGAAACGCTTATCGAAAGCATGAACAAAGGGAACCTACAGAACGTGAACTTAGGTCAATGGCAAAACCTGATGGAGAGCATGAAAGACTTTGATTTCCAAACACTCGGCCTAGATGCCAACCAGTGGCAGGAACTTGCATTCTCGTTTAGCCAGTACCTGTCGCAGCAGAGCCTGGACAGTGGGGCTGCGTCGTCGTCAAGTTTATTGCATAGTCCTGTCGCATCGCCGTTTAGTAGTCCTGGTTACACCACAAGCACACCGCAATCCTCCTTACATGGGTCTAGTGTAAGTTACAATACTTCCACGGAAAGTTTTAGTGGTGGATCAAATCATTCGCAGTCTATACCCGGGATCAAGGTCACCCCTGTATCTGGAACCATGCAGGGCGGAGCTCGTTTGGATGACGATGACGAAGAGGACTTTGACTGGGAGTCGATAATGTAGTGGTAATTAATCAAGTTCACATCAATAAATTGTTCCCAATAAGTGATCTCTGATCAAATTCTGATTTCTCCTTTGGAACTCATAGAAACTCCAGGAGAACTTAGAATTTGATCAGATGTTGTTTTCATCGATAAGTTGTTCCCAAAATATTAACAAATTGAGAACAAAGAGTAAAATCTCTGATCAAAGTCGGATTTCTCCTTATGAATAATTCATAGCAACTCTAGGAGAACTACGAATTTGATCAAATGTTGTTTGTATGCGGATGCCTGTGCATGAAAACTTGTTCGATCCTAAGTGCATGCCAAGTGTGTATCAAGCTGTCAAGTATAAACAACACAAAAACCATCATTTCAACTATGCTACAACGTACAAAAAAAAAACGTTCTATGATAATCATTATAGAAGCGATTTTTATTGTAATATTATTTATTAGCTTACCCATGTAAGCTTGTCGTCACTAAGATGACTCATAAGTGTATATTAAACCTAGGATTAAGATGTATATAATGAGTTGTCCTGGGCCCCTGGTATTTACAGTGTAAAATGCAATGTTTACTGCCTTGTGGTTGAAACGGTTATTGGAAAGACATTGCGCATCGTAAAGTGCCAATAAGCCCCAATGTTTTATTTTGAAAATCACTTCTAATTAGAGAGTGTAGTGACATTGTTTCGTATTTCCTGGTATGGACCCCATATTTGTAAGATATAAAGGTTTGAAATCTCAAAATGCAAATGACGTCAAAGTAGGTATTTGCCCTAATTCCTTGTGGGACTAAAAACAAGTGCCTTTCGATTAAATAATGAAATTTTTTACTAAACTGTATGTTTCATCTATGGAAATGATTCGCAAGTGAAAGAAATCCAGTAGTTTGCACTGGGATGTTTTTGTACAATAAATGATGCCTTCTTTGACGTCATCAAATTAGCATAGTGACATTTAAAGCCTCCATAGCTCAGAAATGTGAAGTCCACAGTAATAATGTACCATGCTATTTTGACCAATCAAAATTTGAGACACGGTACAGCATGGAGTTTTTTATAGTCATGAAATGTGCTCTATTGATGATGGACTTTGCATGTTACACTAAGGGACCGGTGCTTTCCATTTACTTGAACTGACTGGTCTGAGCGGCCAGTTCTTAATAACGTGTCAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BUR3	Forkhead box protein J3 OS=Mus musculus OX=10090 GN=Foxj3 PE=1 SV=1
Q9UPW0	Forkhead box protein J3 OS=Homo sapiens OX=9606 GN=FOXJ3 PE=1 SV=2
Q9ES18	Forkhead box protein J2 OS=Mus musculus OX=10090 GN=Foxj2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007320 (this species only)
Transcription factor family	Fork_head · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00250 all species →	Forkhead	Forkhead domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045912 all species →	Family	Forkhead box protein J2/3-like	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR001766 all species →	Domain	Fork head domain	Interproscan
IPR018122 all species →	Conserved_site	Fork head domain conserved site1	Interproscan
IPR030456 all species →	Conserved_site	Fork head domain conserved site 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46078 all species →	FORKHEAD BOX PROTEIN J2 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09403	FOXJ2_3; forkhead box protein J2/3	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.