Gene detail

Detailed information of gene27297.t1 in Actinoscyphia liui

Genomic Location: chr8:20934865...20944043
NR annotation: XP_020913793.1, CTD nuclear envelope phosphatase 1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene27297.t1

GAAGAAGTGAGTTGTTTCTGTGAATTTTAGGAAAAGTAGAATTACTAAGCTCGTTATAAACAATTCCAAAACTGGCCTAAGCTTGTACGACCTCCAATGAGTAAAGAAATAAGTATGGACTCTTTGAAGAGCTTTTGCAATGTAGCCGGTTTTCGGTTTGTGGTTGTAGCCTTATCCAAACTATGGACGCTAGTTTTGTACCTTTTAAGAAGAAACTTAAAAATGATAATTCAACACAAGACAATCAAATATGATGTATATCCATTATCTCCACTATCTATAGAAAGACTAAAATTAGTAAAGAAGAAAACTCTAGTACTAGACTTGGATGAAACACTTGTTCATACACATCATGATGGTGTTGCAAGACAAACTGTTCGTCCAGGAAGCCACCCAGATTTTACAATGAAGCTTTCTATAAAAAGACGTCCTGTGATGTTTTCAGTATATAAACGGCCGCACGTTGATTATTTTCTTGACTGTGTCAGTCAATGGTACAACTTAGTGGTTTTTACAGCAAGTACAGAACAATATGGTGCTGCAGTTACTGATCATTTAGATAATAATAGAGGCATCTTAAATAGAAGATACTTTAGACAGGATTGCAATTTACAGCCGTTCCAGCAAGGTTACAGTATGTATGTTGGCTATGTCAAAGAATTATCAAAAGTTTGTGACGATTTATCCTCAGTGTTTATACTTGATAACTCACCCGAAGCCTACAGTTATAATCTGGATAATGCTATTGCAATTAAATCATGGTTTGCAGACCCTTCAGACACTGCGTTGCTGAATCTTTTACCAATGCTTGATGCATTACGGTTTGTATCTGACGTGCGCTCTATATTGGGCCGTAGACTCCATATAACTTATCAGGGCCGTAGCCAGGCCGATGCTCAGCTCAGCTCAGCTCAGCTCAGCCGATTCCCAGCTCAGCCGTGAAAGAGAAGTAGATAGATAAACTAAACTAAAATGAAATAAAAATAATAACAAAGTAATAGATCTTGCACACATTACGTTTTCATGGTCGTGAGCTGGAACCAAGGTGAGGTTTAAGCTCCGACTTTCATACCCCATCTATTTATCCAACACCATAGAAAATACAGCCAATCAGAGAGCAGTAGTGCCATTGAATATTCAGTGGTATTCCACTCTTCCTTCCCATCAGGTGCTGCAGTTGTAGGTATTTTCTATGTTGTGGGATAAAATAGTTATACAATGTCTTCTCATTGTATACCATGGAACATCCCACTTGTCACTTGTATTTTCTCTGTATACAAACTCACCTAAAGGCTCGTGTGTATACTTAGAAAATACAAGTGACGAGTGGGATATTCCACGGTGTACAACTCAAAAGCATTGAATAACTAGTATGTATTCTATGCATTTTGTCTGGACGCTCCAATCTCGTCTTGAATCCATTGTTGGAAGTTGGAGCAAGTAGAAAAGGTCTACTAAGTTTTTACAAATTTTAAAAAGAGATCGTAAATTGCATGTGAACATACATGTATACTGGCGAGATGACATACTAGCGAGAAAACTAGTTTATTGGCTTTGAATAATTCCACTAACTTTTGCTTTGAGCTCCATTGGAACAAACAGCTAGGATGAACAGTTACAGTCCAACCTCACTATTTCAAACTCAGTGATTTCGAACCCCCGCTATTTGGAACACCAACTTATTTCCCTTGGATCATTTTTTCAGTCATATTTTACTATCGGTAATTTCACCTCCACTATTTCAAACATTTTTGGCTTCCCTTGGGAGTTCGAAATAGTGGGGTTCGACTGTAATTAGTCACCAGCCTCTTCTCATCTCATACTGGCTCTAGCCCTGGTTATATCAACAGTTGGGGAGGGAATCACCATTCACTAGAAATCTGTAAAAGCTCTGATTAATTCCTAAATTCTCCTTAGATTTGTTTGAATTTTAAAGGAGAATGTGGAGTTTGATTAGCTGGTGGAAATGCTCTTTGATCATTTTCTAAAATCTCCTTCAGATTTTATGACTTCTAAAGGAGAATTTAGATTTTAATCAGTCACTATATGGATTTCCTTGAGCCATGAATGTCCAACCCAAATTCCTGGACTGGACTTGTTGAGTTACATTTTAAGCAAACCTCCAAGTCACCATAATGAGAAACTGCACTTTTTTTTTGAAAGAATAATTCTTTCAAATTATTCTACAATTATTGTAGGTTTTTGTAAATTTAATGTCAGAGGTTACTACTGGTCTGTCAGCTATCTTGAAATGCAACCATGCATTATAACAAAAATGAGGCTGCGACATCAAGGTCATAAAGCCTTTTCTCACAAACAGCTGGTCTGTTTGTTGGGTCACATCAACGGGTTTCTTCCCCAATTGGCAAGTTCCATTGGGTTGTTGCTGTGCCAGAAAAAGTTGCAAAAAGACTGGGAACCTTTTGGTTATCTAAAGAAGGAATAATGCCAAAAAGTTTCTTTGGTCAAGCCCTTTCATGCGTGTTTGCATTTATGAGATGGATGCATCCTGTAAGGGCCAATCATAAGATATTTAATATGAGCCTTCAATTCATTATGTTTTGAAGTCTAAAGAACTTACTTCTAGTCTCCTATGCAGATGTGTAGTCTCGTCACGCAGGGGTAGCATTGCGTGATGAGACAGGTCTCATCACACATGTTTGTATTTTGTACAAGCTATGCTCCTGGATGAAACGTGTTTAAATAAACCACTTACTTACTTACTACTACAGAGGTAGCATTGCGTGACAAGACTTGACACAACTCCATAGAAGACTAGAGAACTTCCAGAGCAACAGCCAAATGTATGAACAGTTTTCTATTCACGTGATTTCATTATGCAATCTTTCAGTCAGTGTTTGAAAATGCTCATTGTTACCCTGCGAGCAGAGGCTCTTTTCTGCCCTACTGGGAGCAAGAAGAGCGGGGTAGAAAAGAACCTGCTCACAGGGTAGCTTAATGTTGAAGTGCAATCCCGAAAATCACAATGCTTTCATACCAACCCCAGTCTAGATGTCTGCCAATCAAAATAGCATATCCAGGACTAGTCTCCTACGCAGCTGTTTTAGAGTCGCCACGCATCACGCTGTCATGCGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28HW9	CTD nuclear envelope phosphatase 1 OS=Xenopus tropicalis OX=8364 GN=ctdnep1 PE=2 SV=1
Q5U395	CTD nuclear envelope phosphatase 1A OS=Danio rerio OX=7955 GN=ctdnep1a PE=2 SV=1
Q8JIL9	CTD nuclear envelope phosphatase 1 OS=Xenopus laevis OX=8355 GN=ctdnep1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007001 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03031 all species →	NIF	NLI interacting factor-like phosphatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050365 all species →	Family	Mitochondrial import inner membrane translocase subunit TIM50	Interproscan
IPR004274 all species →	Domain	FCP1 homology domain	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR011948 all species →	Domain	Dullard phosphatase domain, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12210 all species →	DULLARD PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004721 all species →	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17617	CTDNEP1, DULLARD, NEM1; CTD nuclear envelope phosphatase 1	EC:3.1.3.16	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.