Gene detail

Detailed information of gene27325.t1 in Actinoscyphia liui

Genomic Location: chr8:21376572...21388569
NR annotation: XP_028514003.1, gamma-aminobutyric acid type B receptor subunit 1 isoform X1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene27325.t1

ATGTTTACCGTGAGCGTTTTGTCGAAAAAACCGCTCTACATTGGCGGGCTGTTCCCCATGACATCGGTGGAGAATGATTGGACGGGAGGGAATGGGATCCAGCCATCTGCAGAAATCGCTCTTGAACATGTCAACACGTTTGGAATCCTGGGAGATTATGAGCTGAAAATGCTGTGGAACGACACAAGGGGATCCCCAGGCTGGACGGAGCATCTACTGTTTAATTTCCTAACCACCCCACCCCGTAAGATCATGTTGCTGGGTGCTGGATATTCTTCTTGTAGTACTGTAGTTGCAGCTTTAGCAGGGCTGAAACCATGGAGAATACCACAGGTATCATATGCCTCGACGTCGCCTGGGCTTTCCAATAAGCTGCTCTATCCATATTTCTACCGTACAATCCCAGATGACGCTTCGTTTAATCTACCTCGCATTGCGCTACTCAACGCCTACAACTGGACTAATATAGCGGTCATTTACCGTGACGAAGGCCTTCACCGTACAGCAGTTGAACACCTTCAAAAGGAAATGAAGAAAAGAGGCATTCACGAGATAGCGGTAGAAGGATTTCGTGACAGTGCAGTCACGCAAATGTCTAATCTAAAGAAAAAAGATGCAAGAATAATCATTGGTAATTTTATTGGTCGCGATGCTCGTAGAGTATTTTGCGAGGCTTTTAAACTGAACATGTATGGTCCTCGTTATCTGTGGATTCTTATTGGCTATATCGAGAAGGACTGGTGGAAAGTCAAAGAGACTGATGTAGATTGTACCGCTGACCAGATGCTATATGCAGCCAACTACCATCTTGCCACTGACTACTTATGGCATGCCAGCAATAACCTAGAAACGATTTCAGGCAAGACGGTCAAGGAATTCTTCCAAGAATACGACAGCAAAGTTCCCAAGAATCTACGAGATGAGCATTCGAGCTACGGCTATGACGCAGTCTGGGCAATAGCACTAGCTCTCAATCGCACGCTGACAAGAATGTCTGGGAAAAGACTGGACCTAGTAGATTATGGCGATAATGAGACTTCTAGTCTGTTGATAGAGGAACTTGATCGAACAAGTTTTATTGGTATAACTGGCCCAGTTGCATTTACAGACAAAGGGAATAGAGTGGGGGATATAACTATTATGCAGTTCATAGACGGTAAACATAAACAAGTTGGTCTTTACATCAATCACTTGTCTAAAATCAACTGGACAGGATATGACAGTATTGTATGGCAAGGTACCTCGCCACCATCAGACCGTATGCAAACAGTCTACAAGCTCGTATCGGTTTCTCTTGCACTCTACATCTTCATGATCATTGTGGCGTGTCTATGTATCGTTGTTGCTGTGTTCTTCTTATGGTTCAACGCTAAACACAGAAATATCCGTTACATCAAGATGTCTAGTCCCAACCTTAATAACGTCATCATACTGGGATGCATAATCAATTATATTTCTGTGATGACGTTTGGACTTGATGGGAGCCTGGTGGATCATGGGTATGATGTCATATGTGCGAGTCGTGCATGGATGTTATCTCTTGGTTTTAGTCTCGCTTATGGTGCAATGTTTTCCAAGACATGGCGAGTACATATCATCTTTACCAACAGAAAACTGAAAGGAAAGATTGTGAAGGATCATCATTTGTTTGCGGTCGTGTTACTACTCGTTCTTGTAGATATCACATACTTGACAGTATGGCAGCTTTTGGACCCACTGAAAAGAATTCTGCACAAGTCCAAAACTGAGGCTATAAATCTTGACGTAGAAATGATCTACCAGATAGAGTATTGCGAGTCTCTGAATACATACCGCTGGCTAGGAATACTGTTTGGTTATAAAGGACTTCTGCTCCTGTTTGGAGCGTTTTTAGCCTGGGAAACTCGTAAAGTTACAATCACAGCACTGAATGATTCAAAACATATAGGTTTCTCCGTCTACAATGTATTTGTACTGTGCGTTGTGGGTGCGCCAATGTCCCTAGCCTTACGACACCAACCCGATGCATCATTTGCCATAGTGTCTACTCTCATTATCTTTGCTACATCATTGACTATTGGTTTTGTGTTCATACCAAAGGTTATCCAATTACGTAAGCTAATGACAGCGGGTGGGTCAACCAATAGCATAGAGCGTTCATTTACAGTCGAGAGCCTGGCACACAATCAACTCAATAGCGCGATATCTACAGTAAATAGCCAGACCACAGGAGAGTTACAAGAATGTAAACATTTATTAGAACAGAAAGATGAAGAGATTAAAGATCTAAGACGACGATTGCAGACTTACGAAGACAACTCAATGTCACATCAAAACGAGAATGATTGTCTAGCAATTACACAGGAAGCCCAACAGCAAACATGA

Transcript

gene27325.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UBS5	Gamma-aminobutyric acid type B receptor subunit 1 OS=Homo sapiens OX=9606 GN=GABBR1 PE=1 SV=1
Q9WV18	Gamma-aminobutyric acid type B receptor subunit 1 OS=Mus musculus OX=10090 GN=Gabbr1 PE=1 SV=1
Q9Z0U4	Gamma-aminobutyric acid type B receptor subunit 1 OS=Rattus norvegicus OX=10116 GN=Gabbr1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000209 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01094 all species →	ANF_receptor	Receptor family ligand binding region	Family	Interproscan
PF00003 all species →	7tm_3	7 transmembrane sweet-taste receptor of 3 GCPR	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR002455 all species →	Family	GPCR family 3, GABA-B receptor	Interproscan
IPR001828 all species →	Domain	Receptor, ligand binding region	Interproscan
IPR017978 all species →	Domain	GPCR family 3, C-terminal	Interproscan
IPR017979 all species →	Conserved_site	GPCR, family 3, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10519 all species →	GABA-B RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0004965 all species →	Molecular Function	G protein-coupled GABA receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0007214 all species →	Biological Process	gamma-aminobutyric acid signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038039 all species →	Cellular Component	G protein-coupled receptor heterodimeric complex	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04615	GABBR; gamma-aminobutyric acid type B receptor	-	G protein-coupled receptors	ko04030	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.