Gene detail

Detailed information of gene27458.t3 in Actinoscyphia liui

Genomic Location: chr8:23384637...23397445
NR annotation: XP_020916989.1, pre-mRNA-splicing factor PRP46 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene27458.t3

GTTTTGAACGTTGCGAAGATTGCAAATGGCGGACAATAAAACCATTGAAATTAGAAAACTACGAAAAAAACTTCGGCAAATCGAGCACCTGGAACAAGTAGACCGTGAATTAACAGAAGAAGAATACTCGAAGGTTTTAAAAAAAGACAAAGTACGCAAAGAACTACAAAAACTTGTTGCTGAACGCGATAAAGCTTTGAAACACGCGCAGAAGATGACAAACACAACACAAGATAATATTCCTGAATCCGAAACCTCAACAGAAACAGAGATAGAAGAACATAGCGATGTTATAATTAGGGAGAAGTCTGGAGATGTTAATGTCGTTGATCATGAAAATGATGAGTCCAGTACAGTGGCTCCTCAGAGGCTGTCATCATCATCTGAAGTGAGAGAAGATAATACAATTTCATCAGCATCACCAAAATCGTCGCCATCAACAAGCATAATTGCATCATCATCAACTCCATCATCATCATCATCAAAGTCATCACCATCATCTGCTCCGTCCATCGTGAAGTCCACCAAACAGAGTGACCAAAAGCCTAAAGTTCTGTCTCAAGCTCACAAGGAATGGACAGACTCTGTGTTTTCTGTGCAGTTTCTAGAAGGCCACAATGACTACATCACTGATGTTGACTGTGGAGAGACTGTAGTCATCTCTGGAAGCCGTGATACTACACTCAAAGTATGGGATGCTGATACAGGAAGTGAGATCCGTAGCATGGGAGGCCATACTGGCACTGTGACGTCAGTCCAGTTAATACCAAATATAGGCATAACTTTAGAGGAAGACGCAGTCTCTTCTCTATCTAAAGCTCTTCAGTACCTGGCCATTACTGGTTCAAAAGACTGTTCTATCAGACTGTGGTCGTTAGGAGATGGTCAGATGAAGCGATCTATCTATACGTATTCGCCTGTTGAATGCCTGGATTATAATAAAGAAAACATCGCTTCTGGCTCAGAGGGAGGCAAGGTTGAGGTGTGGGATGTCAACACTGGTGATAATATTCGATCTATTAAAGGTCATGACGATATCGTTACTTGTATCAAGTTCCAAGACGACGGTCGTGTGGTCAGCGGTTCTATGACAGGAGTGGTTAAAGTGTGGGACATTCGGGATCGTTCGCTGCGACCACTATTCGATTCGGAGAAATCCGACATTTCTTATAAAAAGAGACAAATTCGTTCATTGGCTACTAAAGGCGATAATATTTATTGGGGAGACGATGGTGCGAACATTAAAGTTCTGGACCTAGCCTCTGGAAAATTGCGTAAAATTCGCAACCACGAGCATGACTTTGGTTCTACTAACGCGATGGTTACAACAGGGTCATGTCTGGTTAGTGCTGGTTATGATATCGACAAAGGCAATGGCTACGTGAATGTTCGTAGCTTACCATATGAGGGATATCTGGCTACTGTCAATGATAACAATACAGGCTGTATAACCTGTTTAGCCTGTTCACAAGTCAAGAAAGAGGGACAAACCCTTAATAGATTTGTTACAGGTGGATCAGACCTTAAACTATGGAACCAGCAGTCTTCTAGAGTAAAGAAGAGGACAAGATCGGAATCTGAGGATGGATTTGTAACAACGAAACACATTCGACGCTACAGTCAGCAAGACCTGAGTGATACAGAAAGCAGTGATGGTGAATATGACCACAACGATGATGACGATGATGATGATGATGATGACTCCGCTGACAATGCCAGTAGATCATGGTGCACAATAAGTTGATCAGCTACAGACTGCATTAGATAACCTTTTGTGGATGCTCTAGAGTTTGTCGTGAAGCCTGGTTTTGACTAGTGACATAGCAGACTCAGTAATGTACTGCTCATTAGCAGTGCTTGTCTTTTCACTAGACTCAGCAATTTCCGAGTCGAATTGGAAAGAGAATTACTGTGAGGGGTCTATTGACAATCTGCTGGCAGCCTATTGATAACTATTTTTTCACTTGGCTCAGCAATGTACTGCTCATTAGCAGTGCTTATCTTTTCTTATATGTACGACACAAATGCAGCACTGAGTCTTGTTCAGTATGCAACGAACGACTGCTGACCGTGTGAACCTTGTAAAGCGATAATATTAAATATATGTGAACTACGAGATACAATGGATCTTCGATAATTGTATATTTTATTATGACGTCACCACCCAATTGTACAAAGTAAACTTCCGGTTTCAAAGAGGAAGTGACGTCACTTTTTAAATCATAAAATTAATATTTTCCATGAAAGTATGAAAGGAAAATAAAATAGAAATGATTTCATTTCATTGGTGACTAGGTGCTGTTTTTTAATTCTATTCCTTTATTTCATTCATTCATTCGCTCTCTGTCACTCTTTATCCATCCATTATTGGGCTCGTAATCTGCTTGCCTGTCAATCTGTCTGTCTGCTTGGCTGTCCATCTCTGTCTGTCTGTCTGTCCATCTCTGTCTGTCTGTCTGCCTGCCTGCCCGTCTGTCTGTCTGTATCTGTCTGTACGTCTCTGTCTGTCTGTCCGTATGTCTGTCTGTCTGTCTGTCGATCTGTATTTCATTTGTCTCCCTCCCTGCGCACTCTCCTGCCTGTCTGTCCATCTCAATGTCATACTGTGTTTTGTTCATTCATTCTCTCATCCTTTTCGTTTCATTCTCCCCCAAACACACACACCCTTATACTATGTATTCATAAATTTTGAAGGTTGAAACAATCTCTAGGTGCTGCATGTAAGCCTACAATAATAACCTATCTATAACACTATCTATTTGCACACAAAGCCTCTCCTCTCTCTCTTTTCTCCTCTTGGGCTTCCTGTCTCTAATCCTCCTCGCCTCCAGTCCCCCTCTTCGATTCAGCACCACAGGAAACCCATGTGATAAAGTTTTAGAAAGTCGCCTGCAGAGGAGGCTAGTGCACACGTATATTGACTAAAGTTTAATAGCTGACCGTCCTTGCTTTATCCTGAGAAGCATCGGTGCAATTTGCTCTGTCTGCGGAAGGGCGTGATTGATGCTCTCGAGGGTGCTTTTGAACTTTTCTCTCTTTCTTCGTACCTCGTCCTTCTCCTGCAAGAACTCCATCAAATCGTTGGACTCCAACTCCCTCTTGAGACTCTCGACAAGCTGGGTGACAAAGAAGTGCTGGATACAGCGTGGTACAGTGTCGACGATGTTGAGTTTAATTGTGTTGAAACAACGTACCACGTTCTTCTTGGTGTTGATGATTTGCGCGATGTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P36130	CCR4-associated factor 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CAF4 PE=1 SV=3
Q54R82	Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum OX=44689 GN=mkkA PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003330 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR051075 all species →	Family	SCF complex subunit WD repeat-containing protein	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19872 all species →	UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene27458.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.