Detailed information of gene27471.t1 in Actinoscyphia liui

Genomic Location: chr8:23507095...23549993
NR annotation: XP_031564708.1, basement membrane-specific heparan sulfate proteoglycan core protein-like [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q05793Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus OX=10090 GN=Hspg2 PE=1 SV=1
P98160Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens OX=9606 GN=HSPG2 PE=1 SV=4
Q06561Basement membrane proteoglycan OS=Caenorhabditis elegans OX=6239 GN=unc-52 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001081 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00057
all species →		Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan
PF07679
all species →		I-setImmunoglobulin I-set domainDomainInterproscan
PF00053
all species →		Laminin_EGFLaminin EGF domainDomainInterproscan
PF00052
all species →		Laminin_BLaminin B (Domain IV)DomainInterproscan
PF13927
all species →		Ig_3Immunoglobulin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002172
all species →		RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR002049
all species →		DomainLaminin-type EGF domainInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR007110
all species →		DomainImmunoglobulin-like domainInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR000034
all species →		DomainLaminin IVInterproscan
IPR036055
all species →		Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR013098
all species →		DomainImmunoglobulin I-setInterproscan
IPR036179
all species →		Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR003598
all species →		DomainImmunoglobulin subtype 2Interproscan
IPR050440
all species →		FamilyLaminin/Netrin Extracellular MatrixInterproscan
IPR023415
all species →		Conserved_siteLow-density lipoprotein (LDL) receptor class A, conserved siteInterproscan
IPR003599
all species →		DomainImmunoglobulin subtypeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10574
all species →		NETRIN/LAMININ-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0009887
all species →		Biological Processanimal organ morphogenesisInterproscan
GO:0009888
all species →		Biological Processtissue developmentInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene27471.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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