Genomic Location: chr8:23507095...23549993
NR annotation: XP_031564708.1, basement membrane-specific heparan sulfate proteoglycan core protein-like [Actinia tenebrosa]
| CDS | ||||
| gene27471.t1 | ||||
| Transcript |
| gene27471.t1 |
| Protein |
| gene27471.t1 |
| Uniprot term | Description |
|---|---|
| Q05793 | Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus OX=10090 GN=Hspg2 PE=1 SV=1 |
| P98160 | Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens OX=9606 GN=HSPG2 PE=1 SV=4 |
| Q06561 | Basement membrane proteoglycan OS=Caenorhabditis elegans OX=6239 GN=unc-52 PE=1 SV=2 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00057 | Ldl_recept_a | Low-density lipoprotein receptor domain class A | Repeat | Interproscan |
| PF07679 | I-set | Immunoglobulin I-set domain | Domain | Interproscan |
| PF00053 | Laminin_EGF | Laminin EGF domain | Domain | Interproscan |
| PF00052 | Laminin_B | Laminin B (Domain IV) | Domain | Interproscan |
| PF13927 | Ig_3 | Immunoglobulin domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002172 | Repeat | Low-density lipoprotein (LDL) receptor class A repeat | Interproscan |
| IPR002049 | Domain | Laminin-type EGF domain | Interproscan |
| IPR013783 | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR007110 | Domain | Immunoglobulin-like domain | Interproscan |
| IPR000742 | Domain | EGF-like domain | Interproscan |
| IPR000034 | Domain | Laminin IV | Interproscan |
| IPR036055 | Homologous_superfamily | LDL receptor-like superfamily | Interproscan |
| IPR013098 | Domain | Immunoglobulin I-set | Interproscan |
| IPR036179 | Homologous_superfamily | Immunoglobulin-like domain superfamily | Interproscan |
| IPR003598 | Domain | Immunoglobulin subtype 2 | Interproscan |
| IPR050440 | Family | Laminin/Netrin Extracellular Matrix | Interproscan |
| IPR023415 | Conserved_site | Low-density lipoprotein (LDL) receptor class A, conserved site | Interproscan |
| IPR003599 | Domain | Immunoglobulin subtype | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10574 | NETRIN/LAMININ-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0009887 | Biological Process | animal organ morphogenesis | Interproscan |
| GO:0009888 | Biological Process | tissue development | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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