Detailed information of gene27476.t1 in Actinoscyphia liui

Genomic Location: chr8:23601484...23619388
NR annotation: XP_028518930.1, basement membrane-specific heparan sulfate proteoglycan core protein [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P98160Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens OX=9606 GN=HSPG2 PE=1 SV=4
Q05793Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus OX=10090 GN=Hspg2 PE=1 SV=1
A3KN33Pikachurin OS=Bos taurus OX=9913 GN=EGFLAM PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00054Laminin_G_1Laminin G domainDomainInterproscan
PF02210Laminin_G_2Laminin G domainDomainInterproscan
PF12661hEGFHuman growth factor-like EGFDomainInterproscan
PF00008EGFEGF-like domainDomainInterproscan
PF13927Ig_3Immunoglobulin domainDomainInterproscan
PF07679I-setImmunoglobulin I-set domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742DomainEGF-like domainInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR001791DomainLaminin G domainInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR050372FamilyNeurexin-related cell adhesion and synaptic proteinInterproscan
IPR013032Conserved_siteEGF-like, conserved siteInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR017452DomainGPCR, rhodopsin-like, 7TMInterproscan
IPR013098DomainImmunoglobulin I-setInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15036PIKACHURIN-LIKE PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

TOP