Detailed information of gene27666.t2 in Actinoscyphia liui

Genomic Location: chr9:1891334...1892032
NR annotation: KXJ08228.1, Calcium-responsive transcription factor [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q58CW6Calcium-responsive transcription factor OS=Bos taurus OX=9913 GN=CARF PE=2 SV=1
Q8N187Calcium-responsive transcription factor OS=Homo sapiens OX=9606 GN=CARF PE=1 SV=2
D4A7U2Calcium-responsive transcription factor OS=Rattus norvegicus OX=10116 GN=Carf PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006847 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15299
all species →
ALS2CR8Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029309
all species →
FamilyCalcium-responsive transcription factorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14694
all species →
CALCIUM-RESPONSIVE TRANSCRIPTION FACTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003700
all species →
Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0000978
all species →
Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →
Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0006357
all species →
Biological Processregulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene27666.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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