Gene detail

Detailed information of gene27765.t1 in Actinoscyphia liui

Genomic Location: chr9:3306341...3333256
NR annotation: KXJ24652.1, Serine/threonine-protein phosphatase 6 regulatory subunit 3 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene27765.t1

ATGTTTTGGAAGTTTGAATTGCACCCTTCTACTGCAATAGATTCCATTTTGAGCAAAGAGGATTGTACATTGACAGAAATACTCGACGAAGACGATGTTTTGCAAGAAACAAAGTCACAAAATAGAAAATTGATCAATTTCTTTGTCAGGCCAGAAGTACTGGAAGAACTGGTGAACCTGATTATAACAGAACCTGATGAGGACTTTGATGAGAAACTGAGATACAAGCATCCGAATACAGCATGTGAAGTACTTACCTCTGATGTCTACACAATCATTGATAAATTAGCAAGCAGTGAGGATTTACTCAATAAAATATGGGCATTTCTGGAGGCTGATCCTCCTTTGAATCCACTATTAGCAAGTTTCTTTAGCAAGGTTATAGGAGTATTAATATCAAGAAAAACATCATTGATGTTAGATTATTTGAAGACAAAAGAGGACTTTGTATCACTACTGTCTAAACACATGGGTACATCGGCCATTATGGATCTGTTACTTAGGCTTATTACAAGTGTAGAGTCACCTCAACTTAGGGGAGATTTATTGGAGTGGCTAAGCGATCAGAGATTAATAGAAGCCCTAGTGTCATTGATTGATCCAGAAATTGATGAAGATCGAAACAGTAATGCTGCCCAGACGTTAAGTGATATCATCAGACTGAGTAGAGATCATCAGTCACAGATGCAAGAGAGTGCCACTCCTGACCTTTTATTGGACACAATTCAAAAGAGAGAAACGATAAGTAGTTTATTGGATCATATGTTTCATGGAATCCATTCACACAATGACTCTGCTTTAGTTAATGGTATCTTTGTTCTACTAACTTTATTGGAAGTCAAGAAAGGAATGGGTGAAGGAGAAGAACCCATGACGGCTTTAGATGCAGAAAGACTTGCTCAAGGTGTTAGTGCAACACTAGCAGCCTTGACACCAAGACTACAAGACATCCATGATCTCCTTACAGATCCACCGCTGATGAAGCCTATGTATACTACAATTGGGACCCTTGACCCTCCTCTTGGTAATTCCAGACTACAAATTGCTAAACTGGTGTCTTCTATACTGTCTACAAATGGTGATACTATAAACAAAGAACTAGCTAATCTAGGGACTATGAGAGTTTTATGGGAATTATTTTTTAAATATCCTTGGAATAACTTTTTGCACACTCAAGTAGAACACTGTATAAGTACTATATTAAACAACCCTCCTACAGAAGAAGATGGAGAGTTACATACACCCTTAGTAGACACGCTTTTTAAAGATTGTATGTGCATACAAAAGATATTAGATGCTTGGGAAGATCCTGACCCTGAAGTTACTCATTCACAGGCACGGCACAAAGGTTACATGGGTCACCTTACCAACATTGCTAATTATATAGTGTATTATCGTGAAAAGGGTAGAAATAAAGACATTATAGAAAGTGTTTTTAATGAAATACCAGAAAAGGATAGAGAAAAGTGGAACTCATTTGTGTCTGGTACACTGGCAGAGATAAATAAAACCAATACTACAGAACTGGTTGGTCATCACCCGTTACAGTCATCGTCAGATGATGATGATGATGGTAGTAATTACAAGCCTGTAGCATTCCTTCCAAGTGAAACCTCGTTACAACATGTCTTCTCCAACTATCAAATGCAGCAGATGACAGCAGACTTTATGGACACTTTTGGTTTGGATGGTGATGAATTCCAGGAGCCTAACGATGCCCTTACTTCTCAATTTGATAGGATTGGTGATATAAGCTTCAATATCAATGCAAATGAAGATAATCCAAACTCAGCATTGTTTGAGGCTTGTTGTAATGAAAAGATACAGCAATTTGATGATAGTGGAAGTGATGAAGAGGATGTCTGGGAAGAAAAAGAATTAACATTTTCCTCAGTAATTGAAAATAGAAAAAGTACGTTATCAGATAGTGACAGTGACAGTACTGGTAGCGATGAGGAAGAAGAAGACCAAGAATCACCACAGCAACAGAGTGCAGGCAGTCCCAGTGGTGACGACGACAGGATAGTATTTACTGATGATACTGGTAGTCCTACTATGTCACCTCCAAAAACGAATGCACCCACAGAAAACAAGATGGATGTCGACACCGCACATTCGTGGAATGCATTTGAACCCACTGAAGTAGCCATGGATGAGTCTGTATCTATGGATGCGTCAGATGTTGGATGGGATAAGCCACCAACTGCTGATACATCAGACACAGGATGGGCCAATTTTGACAGCTTTAGTGATATCGGCATGGCTGGTGCTAGCACAGAACAGACAAGAAGACGGCCTGACTCACCAGTTGCCATGGAAACTGAAACCTCTCCAACACCATTGGAAAATGATACGTCGGCACCATCTCCTGCTTCCGCTTACATGGTAGGGGAAGACAAACAAGAGTCTCCTTCAAAGTCAAAGCCAGGAGATGATCCCAGTAAAGGCTTGGTGCTTGATACAAGTAGTGTGTTCATCAATCAACCAAATGAAGAGAGTCCAAATAAGAACTCTGCAAGGACGCCCACAGCAGAAACCGCACCTCTCCCTCCACGGGCTGCTAACTACAGTTGTGAAAAGGGTGACGGTGTACCGCTGGCATCTAATGACAGTGATGATGACATCTCAGATGAAGATGACTCTTTACTGGCACAAGATACCAAACCATCAATATCACCAGAAAATCTTCAACTCAAAGTGGAACCCTTTAGTAATATGGTCATTGAAACACCTACGCCTACTTCTGACATTACTGATAAAACTGTAATCCAGAACAGCAGAGAAGAGCCAGTTGCTGACCACCCCTCCCCTGTAAACAATATCCAATCAGAAACTCCTAAAGACAATGGCCCTGTTGATTTTGAGGATCCTGACAACCAATCAGAATGTAGCAGTATAAACAAGTCTTCCAAGTTGGAAGAGTCCCAGCCAAAGATCCCAACACCATCAGAGACTCCACCCCTTGCGAATGGCCCCGGTTAA

Transcript

gene27765.t1

CGCCATTGCACTGGAATTAAACTTCTTTCCCGCTTTGAGGAAAAATCAGAAAAGCTTTTTAATAATCCAGCTTAACGCAGCTTGTTTGAAAGACCCATTAATGGTCTCGATGTTGGCAAAGTTTGTCGTCAGCCGGATTAAAAGCGGCTGAGATTGAGGACAGTACATGTGATCGTGTCCCCTGGCAGTAAATGCCTGCTTTGTGAAAAGGAAAGTATAGTTTTTATGGTTCTGACGAGGCCTGCAATAAAGTGAAAGTTTTTACACTGGATAACGCTACATGGAGAGGAATTCGTGGCGGTAGGGCATTTTTTTCTCCATGCAAAGTGATTGGTTGGACAACAAAGCTCTTGTACATTTTGTGTTGGTAAAAATTTCTTTCTGCAGACCAGAAACATTGTGCAGTTCTGGGAATATACGACGTGGTAAATCGCTTCTTTAGACGTCAAAGAGCTACAAAGGCATTGGCTTATCTTCTATCGTGGTACCTAATCAATTATATTAAGTAAATACCAAAAGAGCCGAGATGTTTTGGAAGTTTGAATTGCACCCTTCTACTGCAATAGATTCCATTTTGAGCAAAGAGGATTGTACATTGACAGAAATACTCGACGAAGACGATGTTTTGCAAGAAACAAAGTCACAAAATAGAAAATTGATCAATTTCTTTGTCAGGCCAGAAGTACTGGAAGAACTGGTGAACCTGATTATAACAGAACCTGATGAGGACTTTGATGAGAAACTGAGATACAAGCATCCGAATACAGCATGTGAAGTACTTACCTCTGATGTCTACACAATCATTGATAAATTAGCAAGCAGTGAGGATTTACTCAATAAAATATGGGCATTTCTGGAGGCTGATCCTCCTTTGAATCCACTATTAGCAAGTTTCTTTAGCAAGGTTATAGGAGTATTAATATCAAGAAAAACATCATTGATGTTAGATTATTTGAAGACAAAAGAGGACTTTGTATCACTACTGTCTAAACACATGGGTACATCGGCCATTATGGATCTGTTACTTAGGCTTATTACAAGTGTAGAGTCACCTCAACTTAGGGGAGATTTATTGGAGTGGCTAAGCGATCAGAGATTAATAGAAGCCCTAGTGTCATTGATTGATCCAGAAATTGATGAAGATCGAAACAGTAATGCTGCCCAGACGTTAAGTGATATCATCAGACTGAGTAGAGATCATCAGTCACAGATGCAAGAGAGTGCCACTCCTGACCTTTTATTGGACACAATTCAAAAGAGAGAAACGATAAGTAGTTTATTGGATCATATGTTTCATGGAATCCATTCACACAATGACTCTGCTTTAGTTAATGGTATCTTTGTTCTACTAACTTTATTGGAAGTCAAGAAAGGAATGGGTGAAGGAGAAGAACCCATGACGGCTTTAGATGCAGAAAGACTTGCTCAAGGTGTTAGTGCAACACTAGCAGCCTTGACACCAAGACTACAAGACATCCATGATCTCCTTACAGATCCACCGCTGATGAAGCCTATGTATACTACAATTGGGACCCTTGACCCTCCTCTTGGTAATTCCAGACTACAAATTGCTAAACTGGTGTCTTCTATACTGTCTACAAATGGTGATACTATAAACAAAGAACTAGCTAATCTAGGGACTATGAGAGTTTTATGGGAATTATTTTTTAAATATCCTTGGAATAACTTTTTGCACACTCAAGTAGAACACTGTATAAGTACTATATTAAACAACCCTCCTACAGAAGAAGATGGAGAGTTACATACACCCTTAGTAGACACGCTTTTTAAAGATTGTATGTGCATACAAAAGATATTAGATGCTTGGGAAGATCCTGACCCTGAAGTTACTCATTCACAGGCACGGCACAAAGGTTACATGGGTCACCTTACCAACATTGCTAATTATATAGTGTATTATCGTGAAAAGGGTAGAAATAAAGACATTATAGAAAGTGTTTTTAATGAAATACCAGAAAAGGATAGAGAAAAGTGGAACTCATTTGTGTCTGGTACACTGGCAGAGATAAATAAAACCAATACTACAGAACTGGTTGGTCATCACCCGTTACAGTCATCGTCAGATGATGATGATGATGGTAGTAATTACAAGCCTGTAGCATTCCTTCCAAGTGAAACCTCGTTACAACATGTCTTCTCCAACTATCAAATGCAGCAGATGACAGCAGACTTTATGGACACTTTTGGTTTGGATGGTGATGAATTCCAGGAGCCTAACGATGCCCTTACTTCTCAATTTGATAGGATTGGTGATATAAGCTTCAATATCAATGCAAATGAAGATAATCCAAACTCAGCATTGTTTGAGGCTTGTTGTAATGAAAAGATACAGCAATTTGATGATAGTGGAAGTGATGAAGAGGATGTCTGGGAAGAAAAAGAATTAACATTTTCCTCAGTAATTGAAAATAGAAAAAGTACGTTATCAGATAGTGACAGTGACAGTACTGGTAGCGATGAGGAAGAAGAAGACCAAGAATCACCACAGCAACAGAGTGCAGGCAGTCCCAGTGGTGACGACGACAGGATAGTATTTACTGATGATACTGGTAGTCCTACTATGTCACCTCCAAAAACGAATGCACCCACAGAAAACAAGATGGATGTCGACACCGCACATTCGTGGAATGCATTTGAACCCACTGAAGTAGCCATGGATGAGTCTGTATCTATGGATGCGTCAGATGTTGGATGGGATAAGCCACCAACTGCTGATACATCAGACACAGGATGGGCCAATTTTGACAGCTTTAGTGATATCGGCATGGCTGGTGCTAGCACAGAACAGACAAGAAGACGGCCTGACTCACCAGTTGCCATGGAAACTGAAACCTCTCCAACACCATTGGAAAATGATACGTCGGCACCATCTCCTGCTTCCGCTTACATGGTAGGGGAAGACAAACAAGAGTCTCCTTCAAAGTCAAAGCCAGGAGATGATCCCAGTAAAGGCTTGGTGCTTGATACAAGTAGTGTGTTCATCAATCAACCAAATGAAGAGAGTCCAAATAAGAACTCTGCAAGGACGCCCACAGCAGAAACCGCACCTCTCCCTCCACGGGCTGCTAACTACAGTTGTGAAAAGGGTGACGGTGTACCGCTGGCATCTAATGACAGTGATGATGACATCTCAGATGAAGATGACTCTTTACTGGCACAAGATACCAAACCATCAATATCACCAGAAAATCTTCAACTCAAAGTGGAACCCTTTAGTAATATGGTCATTGAAACACCTACGCCTACTTCTGACATTACTGATAAAACTGTAATCCAGAACAGCAGAGAAGAGCCAGTTGCTGACCACCCCTCCCCTGTAAACAATATCCAATCAGAAACTCCTAAAGACAATGGCCCTGTTGATTTTGAGGATCCTGACAACCAATCAGAATGTAGCAGTATAAACAAGTCTTCCAAGTTGGAAGAGTCCCAGCCAAAGATCCCAACACCATCAGAGACTCCACCCCTTGCGAATGGCCCCGGTTAACGTTAAACCCCAGATATGATTATAGTCAATCATGCCGATGAAGATACTTGTATACATTTCCAATCCCAGTCGCTTTAATGCATATATAAGTATATATACATCATCAGCCAATAGAATAATGATATAGAATGTCATGTGATCTTGTACAGCCAATCACAATCATTTGTATTTAGGTATTGTTTTTATTTTTAGTATTTGTAACGAATGTTTAATTTAATTAGAACAAGCATTCAAGGTCCTGTTAGGGGATTGCAGTATACCTGAAACAACCAGAAGAAATGCCTTCCAATATTATTGGCCATATTCGATATCTTAAATATTCTGTTTGACAACGAGGCTCCCAGGAATAAAACTAAAGAAATGTCATACATCAAGAGAATTGGAGGGCATTTCTTTTGTTTTATTCATGGGAGCCCCGATACCAAGCAGAGAATTTGAGATGTATTCTCGTGAGGTATGATGTCAATTCTTTTGTTTTATTCCCTGGAGCCAAGCAGAATACTTGAATTCTGGAACGTGGCCTATTGTTATTAGTGAATAGGGGACTTCAGCTCATAATGTTTGACACACGAGAAATGGCATTAAAAATAAAATCCAAAATTTTGTTAGGATTCACATAGGAAAATGTGGTGGATGGCAAGCTCTTGTCATCCAATGTATTTCCCATACAAAATCTTAGAAAACATTATTTTGATTTTATTTTTCATGGCATTTCTTGTGTGTCAAACATGAGCTGAAACTTCGCCTTCTTACTAATAGCGAGCTGCTCTTTTCATTTCGGGAGTTCATTTTGACACTGCTGCTTGATTTAAGGGAGTTGGGGTCATGTGACCTCTTGAATAAGGTTGATTTACCTTCACCAGAAACTCATAATGGGATTGAATTCAATACCCTTATGAGTTTCTGCCTTTACTTAAATGTCTTGGTTGATTTCATGTGTATATTGCAATCTAAAGCTAACATAAATCATGTGATTGTAATCAAGTAAGGCCAAAAGCTGGGACTCTAACACTTTCTTACACTTGGTGATTCTTCTACAACTTGTCCAGGGCCTGGTTGTTCGAAAGGCAGTTATCGCTAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F471	Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Gallus gallus OX=9031 GN=PPP6R3 PE=2 SV=1
Q5H9R7	Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Homo sapiens OX=9606 GN=PPP6R3 PE=1 SV=2
Q922D4	Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Mus musculus OX=10090 GN=Ppp6r3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004058 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04499 all species →	SAPS	SIT4 phosphatase-associated protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007587 all species →	Family	SIT4 phosphatase-associated protein family	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12634 all species →	SIT4 YEAST -ASSOCIATING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019903 all species →	Molecular Function	protein phosphatase binding	Interproscan
GO:0043666 all species →	Biological Process	obsolete regulation of phosphoprotein phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0019888 all species →	Molecular Function	protein phosphatase regulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15501	PPP6R3, SAPS3; serine/threonine-protein phosphatase 6 regulatory subunit 3	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.