Gene detail

Detailed information of gene27982.t1 in Actinoscyphia liui

Genomic Location: chr9:7037086...7041519
NR annotation: XP_028515556.1, LOW QUALITY PROTEIN: uncharacterized protein LOC110241306 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene27982.t1

CGCTGCCATCTCAGGGCTCATTCCATTCATTAGTCGTATCAGTCCTTAAACTTGAATGTTGTGAGGTGCATATTCAAGATGGTAAAATTACAACTGGAAAACACATCAAGTCATTAATTGATGATTTTCCGAGAAACGGTCAGGCTTCCGAGGTGGCATCTCTTTATACAAAAACTGAAACCATGTGCAGTATATTATTGCAGCATATAGCTTGAATCAGCACGATTGACAAGGCCGATCAATCTGTAGTTCTATAGTAGCTTGAGACTACAGTGGCAGCTACACCAGTTTCCACAAGGACACTACAATATTGTTAATCAAGTATGGAAATATCCATAAGCAAGAAGTGGGAGCAGACCGTTGAAGATGTTGCTTTGGCACAGACGACATCCTTGAGTAACAAAGGCTCCCTAGTAGTGGTGGGGTCGGGGATTATGTGCGTTGCGCACTTCACATTGGAGACGCTGACGCACATAAATTATGCTGATAAAGTGTTTTATCTTCTTTCTGATCCTGTCACAGAGGTCTACCTCCAAGAACTCAGACCCGATGCCATCGACTTGTTTGTCCTTTATGGCGAAAACAAAGTCAGGTACACGACCTATGCACAGATAACAGAGGTTCTTCTCCACTACACCAGAAGAGGACAAAAAGTTGTGGTCGTGTTCTATGGACATCCTGGATACTTGGTTAATCCTTCACACGAGGCTATAAAGATTGCCAAATCCGAGGGGCTATCTGCTGTAGAGTTGCCTGCCATTTCATCTCTGGATACCATGATTTCTGAGCTCGGCTTTGAGCCTGGAATTCCTGGCCTTCAAGTGTTGGAAGCAACAGATTTACTCATGTATTCCAGGAAGCTTGTGACAGATACTCATGTGGTCATCAATCAAGTGGGTTGTATTGGGGATGTCACTTTTCACTACAAAGGTTTTCCAAACCCACATTTCCCAGTTCTAATTGAACACTTAATCCAACACTACGGTGAGGATCACGTGGTTTACAACTACATTGGGTCCCAGTTCCCTGTCTGCAAATCTGTTGTGGAGAAGTACAACCTTGTGGATCTCCTAAAACCAGAGAACGCTGCCAATGTAAAAACTATGTCGACCTTCTATTTGCCGCCTCTGAACAAAGGAAAGCCGAATGAAGAAGTTGCCAGAAGAATTGGTATGATAAAAGAAAGCACAAATGATGCCTCGGAGGTATTAGGAAACACGTGCACTGTCGAAGCGACGAGAAGTGGTAGTATAAGAATTTCTGAAGACTGGAGTATTCCAACTGATTATAAGCCTACCAAACCATCTGCTCTTTCAAAGTTGTTAAGTGAGGTTAGTAGTACCCCGTACGGATTTGAGAAAGTGGAGCTTAACGAGACATCCCTTGCCGAATATCAAGCAAAAGCTTTGAGAACCAAGAACTCAGAATGGATACAATTTGCTTTAAAAAGCGATGAAAGCGAAATAAAGAGTGCAATGTCTAAAGCGAAAAGTAGCACGAGATTGCAAACATTTAGATCCGGTGGAGCTAGGCCTGTTATTTCTTCATCCTTCCGAGACGAGACCGTTAATACCTCGTCTGATCAAGTTGATGGTCCAATAAGCACAACCAAGCCTCTTATTGTCTCGTGTGATGAATTGGACAGTGCACCCAACGTAGCTAAACCCCTTATCACTTCACCTTACCAAATGGACAGTCCACCGAACACAGCGATGCCCCTTGTCAACTGGTGTGATCAATTGGATAGTACACCCAACGTAGCTAAACCCCTTATCACTTCACCTTACCAAATAGACAGTCCACCGAACACAGCGATGCCCCTTGTCAACTCGTGCGATCAACTGGACAGTGCACCCAACATAGCTAAACCCCTTATCACTTCACCTTACCAAATGGACAGTCCACCGAACACAGCGATGCCCCTTGTCAACTCGTGCGATCAACTGGACAGTGCACCCAACATAGCTAAACCCCTTATCACTTCACCTTATCAAATGGACAGTCCACCGAACACAGCGATGCCCCTTGTCAACTCCTGCGATCAACTGGACAGTGCACCCAACATAGCTAAACCCCTTATCACTTCACCTTACCAAATGGACAGTCCACCGAACACAGCGATGCCCCTTGTCAACTCGTGCGATCAACTGGACAGTGCACCCAACATAGCTAAACCCCTTATCAATTTATCTGAACAATTGGACGCTCCACCCAATGTCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A2R2JFI5	Methyltransferase/ribosomally synthesized cyclic peptide omphalotin A precursor ophMA OS=Omphalotus olearius OX=72120 GN=ophMA PE=1 SV=2
P9WEN1	Methyltransferase/ribosomally synthesized cyclic peptide gymnopeptides precursor gymMA1 OS=Gymnopus fusipes OX=93828 PE=1 SV=1
A0A4S8L4Q5	Methyltransferase/ribosomally synthesized cyclic peptide dendrothelin A precursor dbihMA OS=Dendrothele bispora (strain CBS 962.96) OX=1314807 GN=dbiMA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012570 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00590 all species →	TP_methylase	Tetrapyrrole (Corrin/Porphyrin) Methylases	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035996 all species →	Homologous_superfamily	Tetrapyrrole methylase superfamily	Interproscan
IPR000878 all species →	Domain	Tetrapyrrole methylase	Interproscan
IPR014777 all species →	Homologous_superfamily	Tetrapyrrole methylase, subdomain 1	Interproscan

PANTHER

No PANTHER signature was detected for gene27982.t1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05568	mnhD, mrpD; multicomponent Na+:H+ antiporter subunit D	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.