Gene detail

Detailed information of gene28061.t1 in Actinoscyphia liui

Genomic Location: chr9:7980171...7984950
NR annotation: XP_020893873.1, guanine nucleotide-binding protein subunit beta-like protein [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4R7Y4	Small ribosomal subunit protein RACK1 OS=Macaca fascicularis OX=9541 GN=GNB2L1 PE=2 SV=3
P63243	Small ribosomal subunit protein RACK1 OS=Bos taurus OX=9913 GN=RACK1 PE=2 SV=3
P63247	Small ribosomal subunit protein RACK1 OS=Gallus gallus OX=9031 GN=RACK1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007463 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR045223 all species →	Family	Small ribosomal subunit protein RACK1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19868 all species →	RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001934 all species →	Biological Process	positive regulation of protein phosphorylation	Interproscan
GO:0005080 all species →	Molecular Function	protein kinase C binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0045182 all species →	Molecular Function	translation regulator activity	Interproscan
GO:0072344 all species →	Biological Process	rescue of stalled ribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14753	RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.