Genomic Location: chr9:10979024...10980868
NR annotation: XP_020893614.1, uncharacterized protein LOC110232741 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families
| CDS |
| gene28226.t2 |
| Transcript |
| gene28226.t2 |
| Protein |
| gene28226.t2 |
| UniProt accession | Description |
|---|---|
| Q8A2I1 | Chondroitin sulfate ABC exolyase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=chonabc PE=1 SV=1 |
| C5G6D7 | Chondroitin sulfate ABC exolyase OS=Bacteroides thetaiotaomicron OX=818 GN=chonabc PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000653 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02278 all species → | Lyase_8 | Polysaccharide lyase family 8, super-sandwich domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014718 all species → | Homologous_superfamily | Glycoside hydrolase-type carbohydrate-binding | Interproscan |
| IPR011071 all species → | Homologous_superfamily | Polysaccharide lyase family 8-like, C-terminal | Interproscan |
| IPR011013 all species → | Homologous_superfamily | Galactose mutarotase-like domain superfamily | Interproscan |
| IPR003159 all species → | Domain | Polysaccharide lyase family 8, central domain | Interproscan |
| IPR039174 all species → | Family | Chondroitin sulfate ABC lyase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR37322 all species → | - | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0030246 all species → | Molecular Function | carbohydrate binding | Interproscan |
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0005576 all species → | Cellular Component | extracellular region | Interproscan |
| GO:0016829 all species → | Molecular Function | lyase activity | Interproscan |
| GO:0006027 all species → | Biological Process | glycosaminoglycan catabolic process | Interproscan |
gene28226.t2.Genes whose expression across the transcriptome samples of Actinoscyphia liui tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinoscyphia liui, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
