Gene detail

Detailed information of gene28294.t1 in Actinoscyphia liui

Genomic Location: chr9:12281683...12297346
NR annotation: XP_028514899.1, uncharacterized protein LOC110239225 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene28294.t1

GTCGCTATGTAAAAATGCTGCAATTATTCGTCTTGATTGCCGTAATTTCTACACCTGTAGCAAGCCAATGCTCATCCAAGAACATCGAATCAAAGATAGAACTTCGAGGACAACCAGTCAATGACATTACTATAAAATGGCATACCGTCAACCAACACCCCTCGAGTGAGCCTGTCACCTACAATGTTTATTTTAACAAGACTTCACGCTTTAATAAGTGCAACTGTGAGACAAAGAATTTACTCTATAATGCTGTCCATTGCAATCAGCAATCAAGTACACCTGGCCACACCCTCAGCTGTACTTTGAAAGAGGAGGAGATTGCAAAGACTAATATAGATTTTATACGCATGGGAAGTATCTGTATTATGATTGAAGCTAATTCCACCAATGATACATGGTATAGCTTTAATGAGTGTAGGAGTCCGTACAGTGAGAATAAATACTGTCACACGATATGTCCTGCGCCAGAAAATGTCCGACTAACCGCTTTATCAAAGAGAAGTCTGAATGTTAAGTGGGACGCTTCAAGCAGTTTGAATGAGAAAGCAATCAAGCATATATTTTCGTTCAGTATTTATTTCCGTCGACGAGATTCATTTGAGAAAGCTAACGTTTCAGGAAAATTCAAGAAAGTCCTCGACACACAGAACAGGAAGTTAACCATGCAAGACAACATGTACAACATTGTGGGCTTAGAGCCTTCTACTTATTATGATGTCAAGATATATTGCTGTAATTTTTTTAAAGCGCCATGTCAGTTTTTTAGCAAGTACATTGGTAGAACACTCGAGGAAGAACCATCCAGAGCACCAATCATAACACATTATGAAATGTACGCGCAAAAGCTGTTGTTCCTTATAAAATGGAAGCTACCTGACATTCTTACCTGGAGAGGACGTATAGTGAGGTTTGAGGTCAGTGTCTGGAAAAGCAAGAACTGTACAGAGGTCAGCTATAAGAGTCTAATACAGAAGAACATCACTACGAATGGAACACAGGTCAGCGTTCATGAAGAATACCAAGCTACGATCATTCTGGACGAAAGCACCGTGTATTGTGGTCATGTAAGGATATGTACTGTGCCTGGGTGTGGCCCGTGGTCTGGTCTCTTCTCGACACGAGATGATGTTTCATACCAGAGCCCTAATTCAATTCCCATGCAAGGTTCCAAAGTGATCCGATCTGCTATAATTTTTGGTGGAATTAGTGCTGTCGGCGTTATTATACTGGTTATGGTTGCTGTTGCTTTGTTAAGACAAAATAGCCGGCAGCAAAGACAAAGACCTTTAAACGAAGAAGTGGGTGATGTGGATGTGGCGTCATCTACAGACACAGACGAGGCAAGTGACAATGAAGCCAACCACCAATACGCTACACCGAACGAAATGAGGCTATTAGAACTGATCCCTCCCCTCCCCTCCCAGGAGGAGTAAACTTCAAATCAACAGTATCCATATAGACATTTGTGGTTTTGGTGAGGTGAACTAGAGGAGAACTGTATGGGACCATTGGTTGTCCACAGAAAACCCATTGAAACACAGTCGAACCTCTCCACAACGGTCACCCTAAGGACAAGATGAAGTGGTCGTTGTATAGAGGTTACAATTATAGTAAATGTATAAATCGATGGCCGGAAAATGCTGGCCGTTGTACCGAGGTGGCCGTTGTGGAGGTTTGACTGTACCTTAACTACCTGTTAAGTTATTTGTTGTGACACTAACTATTTAAGACTGTGTTATTCAGTAATAATAGTTCCGAAATTGGAAAAAAATGAGTTAAAGGCTAGACAATCTGGCTAGGAAATCCATGGTATTCGAACAGCGGTCTGCGGTCTGCAAAGCACGCGTTATTGTGGGATGTCTCAATGAATGTGCGCGTTGGCGTCTGCTGTGTATAAACTCAGGATACGCGGAGAACAGGGGCTGGGCGACAATAGGGACATAAGGAACTCCTGGTCTGCAGCTCCCAGTCAATGAAACATGGTTACTTTGATAATGCAACACCAACTGATACATATATATATATATATATAAGAATACAGTATAGGAAACATATATATATATATTGATACAGTTAGTGCTGCATACACCAAGTACTTACCGTTACTTTACAATACCGCTGACCGCTATAAAACGTACTTGTTAAACATCCTGGTCACGATGCATTGTTGCAGGCAACAGTTTAGCGCATTGTGCAACCGAACGATATAAAGGCACTGCACTTCTTATTAAATAAGTATTGTGCTTAATTATTAAAAAAAAAAAACCAGAAAAGATCAGACTAGATTTACCATAATCGAGCGCTTCATTAGATTATTTTAATAATTTTTTTATGGAAATTTTATGGATTTTTTTTTTTTCAAGCGAACTATTTTCTTATTTATTTTCATATTTTTTTATGGCATTTGCACAATAAAATAGACACTGCACCAGCAGCAAATATAATGGACAGGACACTTATTAAAGTCAAGGACAAAGCTTTCATTCTGAATCTGTGAAATCAAATAAACAAATAGATAAATGCACTACTACACTGTATATGCTCAGGACATAGCTAGGGGAGGGTTCCTGGGGTTCTCTGGGGTTCTTCCTTGCATGTTTATGAAAAATATGACGATGGGAACTCCTTGCTGGATGTTCTAGCATACAGATTAAGGCCTATAGAAACCCTCTTACCAGACAGGCTGGTTAAATTACACCCCCTGAGACTTTAGACCATGGGGGTATAACTCCCATGTAAAAAGGGCGGGGATGATCCATCTCTTTTAGGGGTGTAAATTATGTTTTTTTTTTGTATCAGTTAGTGTGTTCATGATGGCCGGAATGCCATTATTTTTAGCCATCAAGGGTTTAGGGTAGCATGCGAAGAAATAAAAAATGCCGTCATACTGTGTTGGTGGTCTAGACCATTCAGGCATGAAATCTCATTACCAGAGATCGATTGGGACTGCATTCGTCCAAGTCTCCGATTAAACAAAACATTCTGTTTTGGAATGGTATCTTTTAGGGGTCCAATAAAGCTTAAACCATGCCCATATTGGTCTCATTTAGGGGTTTAATTCAAATTTTCCGATAATTATCCCCACCCTTTTTACATGGGAGCCCCCCCCCCCCCCCCCATCCTCTATTTAGCAATTCACCAGTAATGTCAATGGCCCAAAAACTGGTTTTAGTATTGTTTAAAGCTACCGATGGATAGCTGCTTAATAAAGGTTCGAC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0016061 (this species only)

Pfam domain

No Pfam domain signature was detected for gene28294.t1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR050449 all species →	Family	Ephrin receptor tyrosine kinases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46877 all species →	EPH RECEPTOR A5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005005 all species →	Molecular Function	transmembrane-ephrin receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030425 all species →	Cellular Component	dendrite	Interproscan
GO:0048013 all species →	Biological Process	ephrin receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene28294.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.