Genomic Location: chr10:628147...639446
NR annotation: XP_020910601.1, collagen alpha-1(XII) chain [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families
| CDS |
| gene28746.t2 |
| Transcript |
| gene28746.t2 |
| Protein |
| gene28746.t2 |
| UniProt accession | Description |
|---|---|
| Q60847 | Collagen alpha-1(XII) chain OS=Mus musculus OX=10090 GN=Col12a1 PE=2 SV=3 |
| Q99715 | Collagen alpha-1(XII) chain OS=Homo sapiens OX=9606 GN=COL12A1 PE=1 SV=2 |
| P13944 | Collagen alpha-1(XII) chain OS=Gallus gallus OX=9031 GN=COL12A1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006408 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01549 all species → | ShK | ShK domain-like | Domain | Interproscan |
| PF00092 all species → | VWA | von Willebrand factor type A domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003582 all species → | Domain | ShKT domain | Interproscan |
| IPR036465 all species → | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| IPR002035 all species → | Domain | von Willebrand factor, type A | Interproscan |
| IPR052229 all species → | Family | Collagen VI and Biomineralization Protein PIF | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22588 all species → | UNCHARACTERIZED | Interproscan |
gene28746.t2. This gene does have a gene model — the search simply returned no hit.gene28746.t2.
