Detailed information of gene29053.t1 in Actinoscyphia liui

Genomic Location: chr10:5981565...5987286
NR annotation: XP_020910589.1, short-chain collagen C4 isoform X1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000198 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391
all species →		CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008160
all species →		RepeatCollagen triple helix repeatInterproscan
IPR051077
all species →		FamilyCalcium-dependent LectinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24024
all species →		PULMONARY SURFACTANT-ASSOCIATED PROTEIN AInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005615
all species →		Cellular Componentextracellular spaceInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene29053.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP