Gene detail

Detailed information of gene29265.t1 in Actinoscyphia liui

Genomic Location: chr10:10200761...10204131
NR annotation: CAB4004345.1, Retrovirus-related Pol poly from transposon TNT 1-94, partial [Paramuricea clavata]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene29265.t1

ATGGCGGATGCGAGGAATTATGCAATCACGGTTGTCCCTTTGAATGGCTCTAACTATGGAACATGGAAAATCCAATGTAGGATGGCCCTCATGAAGGAAAACCTGTGGGAAATTGTCAGTGGGACTGAAATTGCTCCTGATGCAACGGAAGCCGATAAATTAGCGAAGTTTGTGGTGCGAAGAAACAGAGCACTAGTGACGATTGTGCTCTCAGTCGATACTTCTCTTTTATACTTATTAGGAGATCCTGAGGACCCCGTCATCGTTTGGAAAAAGCTTTCAGAACAATTCCAAAAGAAAACGTGGGCAAATAAGTTGTCCCTAAGACGTAGACTGAATAACTTACGACTTCAAGAAGGAGACTCAGTCAAGGATCACGTTAAGTCAATGACTGAAATCTTCAACGAGCTGGCTGTAATTGGCGCTCCCATGGAGGAAGAAGATAAAGTTGTGACATTACTAGCAAGCTTGCCTGACAAATTTGATATGCTTGTAACTGCTTTAGAAGCAAATAGTGAAGTGCCAAACATGGAAGTAGTAACTGAACGTTTGTTCCATGAAGAGAACAAATTAAATGAACGTGAAAATGTGGAAAATTCCTCTGAGAAAGTGATGTTGGGAAAGAAATCTAAAGACCCTCCAAAATGCCATCATTGTGGGAAGCCTGGTCATTTCAAGCGTAATTGCTGGAGTCTTAAAAAGGAGAAAGAGCAGCAAGACCAGTCAGACTCAAAGTCTGTGAATCATAAGGCCAATGTTGTTACAGCTGACTCCAACTCTGAAAGCCTGGGACTTGTGACACAGGCCTTAGCAGCAAGTGTGTGTGTTAATGATGTATGGGTCATTGATTCGGGTGCCACATGTCACATGACAAATGATCGTAGCCTACTGAGAAATGTCTTGGAACTGACTAAACCTGTAGAGATTCAACTCGGGGACGGAAAGGTGGTCAATGCTACTGCTCGTGGTACAGTGATTTTGTACACGGTCCTGCCTGATGGAATCGAAAAACGGTGTAGTCTTAATGATGTGCTTTTTGTTCCCAAGCTTAGCTACAATCTACTAAGTGTGACAAAAGCCACTGGAGTTGGCTTAAAGGTCAGCTTTGATGACGGTGGATGTAAAATTGTTCGTGCTGATGGTGCAACTATTGCTGTTGGAAAGAAAGTTGGATCTTTGTTTCATTTAAAGTGTCGACGGGAAGTGGAACTATCAAATGCAGCAACTTCTGAATCAAAAAGTTCGAAGGAAATGCTATGGCACCAGAGATATGGACACTTGGGTACTCAAAACCTGAAAAATCTAGCAAATAAATCCATGGTGACTGGCTTTGATTTTGATCCCAAGAAGCAACTAGATTTTTGTGAAGCGTGTGTGCAAGGCAAGCTACATCGCTGTTCTTTTCCAACTTCTGGTGCAAAGAGGGCTACCGAGCCCCTTGGTCTAGTGCATAGCGACCTTTGTGGAAAGATCACTCCAAAGTCTGCAGGTGGTGCAGAATATTTTATGACTCTGACTGATGATAAAACCCGTTATGTGTGGGTTTATGCATTGAAAAAGAAGGATGAAGCCTTCAAAAAGTTTCAAGATTGGAAAGCCCTCGTAGAAAAATCAAGTGGCTACACATTAAAGATTCTGAGGTCAGACAATGGAGGAGAATATGTGTCGACAGACTTTGATAACTTCATGAAGTCAGAAGGAGTAGTGCATCAAACCACTGTCCCTGGAACACCTCAACAAAATGGGGTAGCCGAACGTCTGAATAGAACCTTAGTTGAATCTGTAAGGTCTATGCTAGTTCAGGCTAAGTTACCCCAGAAATTCTGGGTTGAAGCACTCAATACTACAGTTTACTTGCACAACCGAAGCCCTACAAGAGCACTTGATGGTCTAACTCCCTATGAAGCCTGGACTAGTTCAAAGCCTGATGTATCAAATCTCAAGTGCTTCGGATGCACAGCATATGCACATATTCCAAAGGATGAAAGAAAGAAACTTGACCCGAAGGCCAGGAAGTGTGTGTTTCTTGGATATGGAACTGACACTAAGGCGTATCGACTATTCGACGTGTGGAACGACAACCTTGTTGATGTTGAACTGTCAGATGATGATTCAAGTGATGATGTGAATGTTGTGGGTGAAGGTTTAAATGATTTACGCCATTCATCACGTGAAAGACGCCCACCAGATCGTTTGGGAGAGTGGGTGACAGTAGCAAGTGATGGCATTACAGAGCCCAGTACTGTAAATGAAGCCTTAAATGGCCCTGATGCAGATCAGTGGCATGATGCTATGCAGCAAGAAATGGACTCTCTCCATAAACATGATGTCTGGAATCTCACAGAATTGCCAGAAGGACGAAAGGCTATTGGAAGTAAGTGGGTATTTCGTGTTAAGCATAATGCTGATGGCTCAATGGAGAGGCGGAAAGCCAGACTTGTTGCACAGGGTTACTCACAGAAGTACGGTGTGGACTATGATGAAACCTTTAGTCCTGTTGTGCGATTTGAATCCTTAAGAACTGTTATTGCTTTGTCTGTTAAACATAGACTTAAATTGCATCAAATGGATGTAACTACAGCTTTTCTTAATGGAGACTTAGAAGAAGAAGTTTATATGAAACAGCCAGAGGGATTTACTGTTGAAGGAAAGGAACATTTAGTGTGCAAATTGAACAAGAGCCTATATGGATTGAAACAATCACCTAGATGCTGGAACTATGTACTTGATGAACACTTGAAGTCTATGGGACTTGTACAAACTCCAAGTGATCCATGTATTTATGTTTCTGATGATGATGCTAATCCTTTTATTATTGCTGTGTATGTAGATGACATTGTTCTTGCAGGTCCATCTGATGAGAAGATTGCCGAAGTCAAGCAAAGTATCTCTGAGAGATTCGACGTGAAGGATTTGGGTGAGCTTAAGTACTTTCTTGGAATGCAAGTGATTCAGAAAGATGGAATGGTTTGGATTGGCCAACCTACGTACACTGAAAACATTCTTAAGAAATTTGGGATGGAGAATTGCAAGCCGGTTGCCACCCCAGTTGATCCCAACTCAAAACTCACCAAGGCTGATGCAGTCAATGTTCCTCATAATGAGTCAGATTATCAGTCAGTAGTTGGAAGTTTGTTGTACCTGTCATCTGTTTCACGCCCTGACATTACATTTGCTGTTAGCAATGTGGCTAGATATTCCTCTAATCCAACCAATGAACATTGGACTGCTGTCAAGAGGATTCTACGATATCTCAAAGGAACTGTGAACTATGGTTTATGTTAA

Transcript

gene29265.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
P04146	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3
Q9ZT94	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000038 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13976 all species →	gag_pre-integrs	GAG-pre-integrase domain	Domain	Interproscan
PF07727 all species →	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF14223 all species →	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR025724 all species →	Domain	GAG-pre-integrase domain	Interproscan
IPR013103 all species →	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42648 all species →	TRANSPOSASE, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene29265.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.