Gene detail

Detailed information of gene29276.t1 in Actinoscyphia liui

Genomic Location: chr10:10426826...10442765
NR annotation: XP_028513295.1, LOW QUALITY PROTEIN: sorbitol dehydrogenase [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58D31	Sorbitol dehydrogenase OS=Bos taurus OX=9913 GN=SORD PE=1 SV=3
P07846	Sorbitol dehydrogenase OS=Ovis aries OX=9940 GN=SORD PE=1 SV=1
Q4R639	Sorbitol dehydrogenase OS=Macaca fascicularis OX=9541 GN=SORD PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003608 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00107 all species →	ADH_zinc_N	Zinc-binding dehydrogenase	Domain	Interproscan
PF08240 all species →	ADH_N	Alcohol dehydrogenase GroES-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013149 all species →	Domain	Alcohol dehydrogenase-like, C-terminal	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR045306 all species →	Family	Sorbitol dehydrogenase-like	Interproscan
IPR002328 all species →	Conserved_site	Alcohol dehydrogenase, zinc-type, conserved site	Interproscan
IPR013154 all species →	Domain	Alcohol dehydrogenase-like, N-terminal	Interproscan
IPR020843 all species →	Domain	Polyketide synthase, enoylreductase domain	Interproscan
IPR011032 all species →	Homologous_superfamily	GroES-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43161 all species →	SORBITOL DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0003939 all species →	Molecular Function	L-iditol 2-dehydrogenase (NAD+) activity	Interproscan
GO:0006062 all species →	Biological Process	sorbitol catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00008	SORD, gutB; L-iditol 2-dehydrogenase	EC:1.1.1.14	Fructose and mannose metabolism	ko00051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.