Gene detail

Detailed information of gene29329.t1 in Actinoscyphia liui

Genomic Location: chr10:11452563...11466889
NR annotation: XP_020893517.1, protein GDAP2 homolog [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene29329.t1

GAAAATACTTGACAATGGACCCTCTAGGAGCTGTTTCTAGTACTGTAGACATCATAACGCTGCCTAAATGGTCGTGCACTCCAATCCCTGAATATCCACAGCGCTTACAAGAAGAAGACGAGGCTTCGCTGCCTTCGCCGTTTCCTGTCAGAAGAGACATTAATAACAAGGTTGCTCTGTGGAATGGTGACATCACAGGGCTTCAAGCATCAGCTATTGTCAACACAACCAATGAGAGCCTGAGCGACAGGGGAACTTTGAGTGAAAGAATCCATTGTGCTGCTGGACCTGATCTACTTGTAGAATGCAAGAAACAACTCCTAGGTTGCAGAACTGGAGAAGCTAAAATTTCAGATGGTTATAACCTTCCCGCAAGATATGTGATCCATACAGTTGGTCCTCGGTACAACATCAAATACAAAACTGCTGCAGAGAGTGCCTTATTTTCCTGTTACCGTAACGTCATGAGACTTGTCAGGGAAAACAAACTGGAGTCTATTGGACTGTGTGTCGTCAATACTGCTAAGAGAGGATATCCACCTGAAGATGGAGCTCATATTGCACTAAGAACAGTTCGTAGATTTTTAGAGAAATATGTGAATACTGTTGAACATGTAACCTTTGTGACTGAAGGTGCTGATGAGGCAATTTACAGGAAAATTATGCCAATTTATTTCCCAAGAAGTGAAGTGGAGGAAGATCACTTATTGAAGATTATGCCTAAAGATATTGGTAATGAGGAAGGAGAGCCTATAATACCTGAAAGACAAATCAGAATAAGTAATAACCCAATATGCGCTGATGGAGACAGCGATATCGAAGAAGGAGAAGATATATTAGACATTCAAGAAATGCATGTAGGCCAGCATGCGTTTGCCGCTATGCGTGGGGACCACGACCAAATGTCACGACAAAGAGCGCAGAGAGCTCCAGATGCAATGCATGTTGCAGAACGACAACGAATTTACCAACGGTGGCTGCGTAGAGCACATACCGAAGACTTCACTGCATTCAAGCAGCAAAAAGTATTGTATCCATCAGGGGTTGACTTTCTTGGCCGACATGTAGTAGTGTTTGTAGCAAGGCACTTCAATGCACGCCAGTCTGATCTTAGCAAGGCGGTTGCCTACTTTGTGAGTGTTCTCGATAAAGTAGTTAACAGGGATTATGTAGTGGTGTACTTCCACACACACAGTACTGAAGAGAACCAACCATCGCTATCATTTCTGAAGGAGCTCTACCATATTGTAGATCACAAGTATCGACGGAACCTCAAGGCTTTTTACATCGTCCATCCAACAGTGTGGGCCAGAGTAGTAACCTGGTTCTTTACCACATTCACAGCATCAAGCATCAAAGACAAGGTCCACTTTATCTCTGGTATTCAGTATCTCTATGACTGGATCAACCCTGACCAACTTGATATTCCAGCATTTGTCCTGGAACACGATATGAAGGAAAATGGAACAAATTATCACACACCGTCCTCAAGCTACAGAACAGGAAGTCTTTGATTTCACCATGCATATGAGCAGGAAAGTCTGATCAATATTTATCTTCTCCTTTGGATTTCGTAGAGTGAGGAAGAGAACTTAGAACTTAATCAGAGATCAATCACAAAATTCCTGTATGGAGCCTTTCAATTGTATTTTAAAAGAAATTGACTTTGGCAGACAGTGTTTTTGTGGATTACTCTCAAAGCAGTTGATCCGTGGAAAACTTGGTCTTACTGCCCAAGTATTGAATTGACCCGATTTTGTATAATTTTACATGCCAGTGAGTGCGACAATGGATCCAAGTCAAAGTTGGAGTTTCATTTCTTGTATTTTTGTCTACAAAGGTGGCTTAGTTGGTTGGTGTGCTGCTTTCTAAGAGAGATTTCATGGTTTGATTTCCCACCAGCTGTCCTGATTCTCATTTATACTTGTTTCAACTTTCATCTGATCCATGTAGCTCAGTGTAGCTTGAAATACTCATGTGACGAGGCACTGATGGACAGAGGATGTAAAGGTTGCAATTTTGTCACAAGGTGAACTGATCATTGTTCTCGTTTTGACAATACTTAACAAATATTTTAGCCACATTGAGGCACCTTAGAAGCATTAGAATCTCATCTGATAGGAATATGTTTAAATATTTTGAGAAAAAAATTACATAGAAATCAAAACATAACTTATGATTATAAACTTTTGAGAAAAAGACAGAGAGACAGAGAAAAATTGTATAAAATCCATGAATTGCTTTTGTCATATTCCCATTTGGAATCAATGGAAAAAACGAACTCTGGAATCAATGGGAAAAACAACTCTTGATTCAATTTGGAAAAACAAACTCTGGAATCAATGGGAAAAACAACTCTTGATTCAATGGGAAAAACGAACTCTGGAATCAATGGGAAAAACAACTCTTGATTCAATGGGAAAAACAAACTCTGGAATCAATGGGAAAAATCAACTCTTCCCATTGATTCAAAATGGGAATACAACAAAAACCATTAATGGCTTTTATAAATTTTCCCTGTGGGAGAGCTAGAGTGCAAATAGTTTATTATTAAATTGCTATTCGAATTAATAAAACAATATTTCCTCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7T167	Protein GDAP2 homolog OS=Nematostella vectensis OX=45351 GN=gdap2 PE=3 SV=1
Q2KIX2	Ganglioside-induced differentiation-associated protein 2 OS=Bos taurus OX=9913 GN=GDAP2 PE=2 SV=1
Q9NXN4	Ganglioside-induced differentiation-associated protein 2 OS=Homo sapiens OX=9606 GN=GDAP2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001271 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01661 all species →	Macro	Macro domain	Domain	Interproscan
PF13716 all species →	CRAL_TRIO_2	Divergent CRAL/TRIO domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043472 all species →	Homologous_superfamily	Macro domain-like	Interproscan
IPR036865 all species →	Homologous_superfamily	CRAL-TRIO lipid binding domain superfamily	Interproscan
IPR002589 all species →	Domain	Macro domain	Interproscan
IPR035793 all species →	Domain	GDAP2, macro domain	Interproscan
IPR001251 all species →	Domain	CRAL-TRIO lipid binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11106 all species →	GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for gene29329.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24997	GDAP2; ganglioside-induced differentiation-associated protein 2	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.