Gene detail

Detailed information of gene29345.t1 in Actinoscyphia liui

Genomic Location: chr10:11873860...11890559
NR annotation: XP_020904059.1, probable inactive peptidyl-prolyl cis-trans isomerase-like 6 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene29345.t1

GCAAAACGAGCAAAACAGAGAAGATGGCTGACGACAAGATCTCCATTTCTGTGGTTGGCCTCCTAAAAGAGGTCGATTTTCACATGGTTAAGAATACTGCAGAGCAATTGCATCAAAAGGAGCCCGAAACCTTCACTGAACCCGATGTGGTCGGTCTACTTCAGTGTGATTGGATTCACTTTATGAACTCTAAGAAGCGAGAGATGAAGGGTGAGATGTGGGCCTTCCAGGAAAGTGTTGTAGTTTTTATCGATGATCAACTTATCGGTGGAAAAGAGGAGTTCTTAAAACGAGCAAGAGAGGACTACAACTATCAAGATTTGAGACCTCTTCCATTGTGGTATGCATTGGCTAAGGAATCTTATAAAAATCATTTGATAGACACCAAGCATGATTTTGTATTCATGGAAATTTCAATTGGTGATAAAAGTGTTGGAAAACTGATTATAGAGTTGATATCAGATAAATTACCCAAGACATGTCATAACTTTATGATGCTGATCAAAGGGACTGAGGTTGAAACAGAACGTCATGAACCACCATTGAAACTCAAATATAAAGACACCATTATTCATCGTATTGTGCCTAATGGATGGATACAGGGCGGAGATATTGAAAGTGGGAGAGGAGACGGTGGGGAATCTACTTATGGGCCTACATTTGCAGATGAAGGTTTCTCAGTGGCCCATTCAAAGCGTGGTATTATTGGGATGGCTAATAAGGGTAGACATACTAATGGATCACAGTTCTACATGACCTTACAACCTGCGCCATGGATGGACACGAAATATGTAGCCTTTGGCCAAGTGATAGAAGGACTAGAAGTCCTGGACACTCTTGAGAACCAAGAAACGTTTAATGAAAGACCCAAGAAACAGTGTCAGATAGTTGACTGTGGAGTCTTTGATGTGCACAAACTATGGAAGTGAGAGCTCTTTGTAACCTTCAATAATTTATTTGCCCCTAACCCCCCTTCCTCCCCTCACTCGTGAAAAGACAAGCACTGCTAATGAGCAGTACATTACTGAGTCTGTGTATGTTGCTTGTGCTTATGTCACTAGTGAAAAGACAAGCACTGCTAACGACCAGTACATTACTGAGTCTGTGCATGTTGCTTGTGCTTACACTAGTGAAAAGGCAAGCACTGCTAACGAGCAGTACATTACTGAGTCTGTGTATATTGCTTATGCTTATGCTTATGTCACTAGTGAAAAGACAAGCACTGCTAATGAGCAGTACATTATGGGATTAGTGGTATGATCAGATAACTGAGTTATATTAATCCTGTTTTACAAGAGAGATCTACAATAGGAGGTCCAGAATTCCCAACGATTCATACCAGTATAGTTGTATAAATGTATATGGTTCATGTTCTTACCAATTACTGGGTTGCAACTGACATCACGGCAGCCATCTTGGTTGAACTTCAACAAATTTATCATTTATCCAGCAATAATATCTTATGATTGCCCATTAATCCTTGGCTAAGACACATTGTCCACTGCTCTGCCTAAGTTAAAAAGCCAATAAGACTCAGGGTGCGAGGATGCACATTTTGGTGGGGCATAACAGGACAAAAAACATTGTATAAATAATTTTTGTAAATGTTTAACAAAGATATTGTAAGAGTTTGCAACACTGGGAAAAATTTCTAAAATCCATGAATGTTTTTTGTCATATTCCCACTTTGAATCAATGGGAATAGTTCGTTTTTCCCATTCAGTATTCCAACACCATCAAAAACCATCAATGGGAATAGTTCGTTTTTCCCATTGATTCTAAATGGGAATATGACAAAAGACATGCATGGCTTTAAAAAAATTCCTTTTGCATCAAAATATAAATTTAAATATAGATATACTTTAAACATGAAGCCACGAAGGGCATAAGCTCCTCCTACTCCAGTTGTTCTATTAGTGACTCGTCGAGTAGAATAGTTATCTGCATAAGAGCATTTTCAATCATACTTAAATATTTTGTAAATGTTATTCTAAAGAGAACTCACATCTTTGAACTTTGCTTACCTTTAGTTCATTCAAATCATCCGACATAGTGAATATGCCATTTGGACTCGCAAATGCGCCATGTGCCTCCCAGGGAAGCCTTCCTTTCATAGTGCGCCCTCGTGTTTAAGAGTCCTCCTTTAATGCGTTTGATATCTCAAATTTTCTGCTGGACACCGACGCTCTCGGGAATAAAACAAAAGATGTCGTCATACCTCAAGAGATGGAAGGCATATTTGGATCCTTGATATCAATTTGAGATATCAAACGTGATCTATTGATTGCTCCATTATTGGGTATCCTGTGGCAAGAGGGGGGACTGGGGGCATTTCTACCTTGATCCCAGTCTCCTCTCTTCCACAGGTAGCCCATCCGATTAAATATAAAGGGGTTATTGTTTTTGTGTACCCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D6D8	Probable inactive peptidyl-prolyl cis-trans isomerase-like 6 OS=Mus musculus OX=10090 GN=Ppil6 PE=1 SV=2
Q8IXY8	Probable inactive peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo sapiens OX=9606 GN=PPIL6 PE=1 SV=1
Q1RMP7	Probable inactive peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos taurus OX=9913 GN=PPIL6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006040 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00160 all species →	Pro_isomerase	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002130 all species →	Domain	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR029000 all species →	Homologous_superfamily	Cyclophilin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11071 all species →	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000413 all species →	Biological Process	protein peptidyl-prolyl isomerization	Interproscan
GO:0003755 all species →	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12739	PPIL6; peptidyl-prolyl cis-trans isomerase-like 6	EC:5.2.1.8	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.