Gene detail

Detailed information of gene29353.t2 in Actinoscyphia liui

Genomic Location: chr10:12021275...12023637
NR annotation: XP_020904064.1, frizzled-4 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene29353.t2

TTCACGATATTGGTCACGGGAAACTGAACGACTTGCCAAAACAAGTCGTGTTTTTGAATGTCAACTCGACACGAAGCGATCACAAGTAATCCCAAGTCTACGGAAGATTCCTTCTCAACAGCTGAGGCGTAACTGGAGTCGCGACTTGCTGGCGTTTAATCCCGTTGTTGTGTGATTTCTTGAAGGAGTATTCGAAATTGACAGAGTAATCTTCCATTGAAGATCACACTACAGCAGCATGACAAGCCAAAGGCTTTCTTTGTGTTTAAAACTACTTCTTTTGGCGTGTTTTTTATGTTGTTGCTCGGCACAGTCGCGAAGGGATTGGCAGTGCGAGAAGATATCCATCGACTTGTGTCGAAGTACGGGGTACAATGTAACAAGAATGCCCAATCTCATCGGCCATGAAAGTCAACGCGAAGCAGAGGCTCAACTCAAGCAGTTCTTGCCACTCATCCGTAATGGTTGTGGAGGGAAGCACCTAATCTTCTTCTTATGTTCAGCTTACGCTCCGATGTGTACAGATAAGCTCAATATCTTATTAACTTCATGCCGTCCTCTTTGCGAGTATGTTCGCAAATCGTGTTTACCGGTGTTAAGCGAATTTGGGATTCCTTGGCCGCAGCTATTGAACTGTTCACGATTCTTGCCTTCCAACGACGAAAAGCATATGTGTATGCCTGGACCAAACTTTACAGAGCATCCTACAACAGTAGACCGAGATCGTGGACTACCAAACGATACTTCGTCGCCGACAAATCGTAAGCCCAAGGGATCGGAACAATGTCGAAGATTCAAGAACAGTGCCAACTACTACTTCGTGCGAAGCACGGAATCTTGTGCAGTGCGTTGCAATGAGGAAGGCATCTTTCTCACTTCGGACAAGAAGACAATCGAAGTGTGGATGACTGTGATATCGGTGCTGTGTTTCGTCGCAACACTGGTAACTTTAACCACGTTTTTGATCGACACAAAACGATTCGAATACCCCGAACGCTCTATCATCTGGCTTGCCCTTTGCTACAACTTCTATTCTTTGTCCTACATTATACGGCTTGGCGCTGGACGAAGCGCCATTTCATGCGATGTGGACCCGACTACGAATGTAAAGTTTCATATCCAGGACGGTCTACGGAATACCGGCTGTGCAATTATCTTTCTAATTCAGTATTTCTTCAGCATGGCAGCGACAATTTGGTGGGTCATACTCGCACTGACATGGTTTCTCGCCGCTGGCATGAAATGGGGGAACGAGTCGATCGGGTCTTACGCCAATCTGTTCCATGTAATCGCTTGGGTCTTACCATGTATCAAGACAATATTTATCCTTATAACGAGAAAAGTGGACGGGGACGAGCTCACTGGACTGTGTTTTGTTGGGAATCAAGACTTGATTGCGCTCGCTGCGTTTGTACTGGGGCCTCAGTTTACATATCTAATTATCGGCACTTTGTTTCTGATTGCGGGATTTGTAGCGTTGTTCAGGATCCGCACGACAGTCCAGCGTGCAGGTCAGCCCAAAACAGAAAAACTAGAACGCTTCATAGTGCGAATTGGGGTGTTTTCGGTACTTTCCACCATCCCCGCCACTGCAGTAATTGCGTGTTATTTTTACGAGTATGCGAACAAGGAGTATTGGTACTACGGGAAGCGAGACTCCGCAGTCGCCGAACCAAACTTCAATATTTTCGTCATAAAACTCGTCATGTCCCTATTTGTAGGGGTAATATCAGGATTGTGGATCTGTTCGGCCAAGACAGTGAAATCGTGGAGAAACTTTTATTACAAATTGAGCGGGAAAAGTCAGCCACGACGGACACCAAAAAACCCCAACCCGAACGAGACGACAGTGTAGCCTAGACGTTATTGTAAAACCGGTGGAAAACACCTTAACATAACTACTGGTGGATGAATTGTCTCCTTACGATATGTTGATAAAAATATCGTTTGTTTACTAGTCGAAGGAAGAATTTGAATACGCGAACGATAAAGCAACGAGCGCTGGAAGGATAAACGATTTTCACTCTAACAGCCAGGATTAGTTCTGAGCTCTTGATCGTAAAACAGCGTTAAAAAGCGACCCTAGAAATCGAGAAATTAGAACAAGAAGATATCTTGTGGTGTAATAACTGCATGTTATCCAAAACAAACAACTATATGCGCGTGATTCGTCTGGTTTGAAATCCTCAGTTTTAGAATCTCATAAATCAAATCGTCAACATACAGCCAAGTGTACAGACATATGATTGTAAATTACAGAACCACAATACTCTCACTACTTAAAAATTATCTCCATTTTGATGTCTCTGTATGTAGATCGAGTTTGACAGTGTTTTGAATAAAATCAGCCAACGCGATGGAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ULV1	Frizzled-4 OS=Homo sapiens OX=9606 GN=FZD4 PE=1 SV=2
Q9IA05	Frizzled-4 OS=Gallus gallus OX=9031 GN=FZD4 PE=1 SV=1
Q61088	Frizzled-4 OS=Mus musculus OX=10090 GN=Fzd4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000345 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01534 all species →	Frizzled	Frizzled/Smoothened family membrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000539 all species →	Domain	Frizzled/Smoothened, 7TM	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR015526 all species →	Family	Frizzled/secreted frizzled-related protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11309 all species →	FRIZZLED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0017147 all species →	Molecular Function	Wnt-protein binding	Interproscan
GO:0035567 all species →	Biological Process	non-canonical Wnt signaling pathway	Interproscan
GO:0042813 all species →	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene29353.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.