Gene detail

Detailed information of gene29677.t1 in Actinoscyphia liui

Genomic Location: chr10:18017159...18025146
NR annotation: XP_031570077.1, HIV Tat-specific factor 1 homolog [Actinia tenebrosa]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene29677.t1

ATTATTTTGGTTTTGGTCTATTTCATTTTTGGTAAAAATTCATCCAGTGTCACAACCTGTCACGCAAGTTGAAATGTAACGCAATCCACACATGAGCCCGCGAAAACGGATCATCAATATATGCGCAAAGCATCATTTAATATACAAAACAGCTGACCCAAAGTGCCGGCTCAGGTGTCAAATCGAAAACTTGGAAAACTTTGCAGAAAAATTGAAACTTTTGAGTTCAAATTTCACTCAATTCAGCAATTGGTCTGGTAAAATGGCAGCTAACTCTAACGAGGATGCGTCACAGTTTCTCCAGGAGTTGAAATCTCAAGCAATTCAAGGTGGTTCAAATATAAAGAATAGTTCCACATGGACCGACACCAACGATGGAACGACGTATGAATGGGACGCGGAGAAGCAGGGATGGTTTCCTAAGGTTGATGAAGACTTTCTGGCAGCATATCAAATGAACTATGGCATAGTCGCATCAGTTGACACTGACACAGAGACGACATCCTCTACTGAAAACACAATCACGACTGAACCACGTTTACCCCAGCCTGTTGCAGGAGCAGCCAAATCTGGAACCTCCGCATCTGTTGCTAATGAGGAAAATAGCAAAAGTGATGCCAAAGAAAAAGAAACCGATGAAAAGGGAAAGAAAAGAAAAGCTAAAGAGGATCCTGTCTGGTTCCAAATGGATCAGTCCAAAAATGCTAATGTATATGTATCAGGCCTTCCCCTAGACATCACTGAAGAAGAATTCATAGAGATGATGTTAAAGTATGGAATTATTATGGAGGATCCTGATACAAATACATTAAAAGTGAAGTTATACAAAGATGAAGATGGTAAGCCCAAAGGTGATGGAAGATGCTGCTATTTAAAAGTAGAAAGTGTTGCTTTGGCGATTCAACTTTTGGATGAAAGCGAGTGCAGAGGCAGTACATTGCATGTGGAGCAGGCTGAGTTCCAAATGAAGGGTAATTATAATCCTTCATTGAAGAAAAAGAAGAAAAAGAAGAAGAAGAAACCTGGGAAAGGACAAGACAAACTTCTTGACTGGGTGGACCGGGATGTCAAAAGACCCAAGAATGAACGTGTTGTTGTTATCAGAAACATGTTTGATGCACAAGAGTTTGAGAAAGAACCCTCTATGATTCTTGACTTGAAAAGTGATCTTAAGAAAGAATGTGAAAAGTACGGTGAAGTGAGGAAAGTAATTGTATTTGATAGAAATCAAGAAGGAATCTGTTCAGTGGCATTCAAAGACCACGAGTCAGCAGATTCCTGTATAACGGTTATGAACGGTCGATGGTTTGCGGGAAAAAGGCTCGAGGCATCGAAGTGGGATGGCGTGACAAACTTCAACGTACAAGAATCGGAAAAAGATTTGCAGGACAGAATGGAACACTGGGAGAAATATTTGCTTGGCGAAGAGGATGAGAGTCCAAAATCCACATCGTCTTCCACTACTACGAAAACAGAAAGCTGACTCTACGCAAGACCTCCGTGTTTACACTACGGAACGTAAGATATTCCTCCGTGCGTAAATGAACAAACGTAACTAAGATAGAGTCGTTTTCGTATGAGTGAGAAACCTACGACACGGAGTTACGGTCATGGTACGGAATCAACGTCATCTATTCAACCAATCACAGCGCACGAAATCACTGGTCGTCCAATCAGAATGCTCAGACATGGTACCATCACGGTCACGGTACGGCAAGTACTGTACCGTAACCACTTCCCACTCACACGAAAAGGGCTCTGTTCTATAGGTATGGACGTAAACGAGCCAACGTAAGGCTTCTCACGTGCACATAGAGCAGATTTCGAATGACTGAAAAAAACACCCACACGGCACGGCTACAAAACGGCACGGACACGGCACGGTTACGAAACGGCACGGACACGGCACTGTTACGAAACGGCACCATTACGAAGTGGCACGGACACGGCACAGTTACGAAACGGCACGATTACGAAGTGGCACGGACACGGCACAGTTACGAAACGGCACGGACACGGCACGGTTACGAGCACGGAAACGGCACGGAACTTCTAACGTCACGGAACTGAAACTCACGGATTTTTCATCGTCATGCGAAATCTGCTCTATCGCACGAGAGTTGAATACGTTTTTATTGTAAGGCTGTTTACGTAACGACGTGTATTTCAGTAGCCACTTGCGTAACGGTAGTAAAAAATAAATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43719	17S U2 SnRNP complex component HTATSF1 OS=Homo sapiens OX=9606 GN=HTATSF1 PE=1 SV=1
Q5RB63	17S U2 SnRNP complex component HTATSF1 OS=Pongo abelii OX=9601 GN=HTATSF1 PE=2 SV=1
Q8BGC0	17S U2 SnRNP complex component HTATSF1 OS=Mus musculus OX=10090 GN=Htatsf1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004719 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR003954 all species →	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR034392 all species →	Domain	TatSF1-like, RNA recognition motif 1	Interproscan
IPR034393 all species →	Family	TatSF1-like	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15608 all species →	SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005684 all species →	Cellular Component	U2-type spliceosomal complex	Interproscan
GO:0005686 all species →	Cellular Component	U2 snRNP	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13093	HTATSF1; HIV Tat-specific factor 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.