Gene detail

Detailed information of gene29679.t1 in Actinoscyphia liui

Genomic Location: chr10:18039532...18043238
NR annotation: XP_020892523.1, wiskott-Aldrich syndrome protein family member 3 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene29679.t1

CCTGGATCCTCTGAGTAGCTGGTGAGCTCGTATTCTCATCCAAAATGCCTTTGATCAAGAGGCTGATTGAGCCAACTAATCTGAGTCGAGGGAAACTTGACAATTCTTCCGCAAGCGAACTTGAAGCCGTCTCTGTGAATACTTTGTGCGGTATAATGAGACAGCTTAGCAGTTTATCCAAGCACGCAGAGGATGTTTTCGGTGAGCTATTTACCGAGGCTACTATCATCAGTAAAAGAACGACTTCCCTACAAACACGAATACAAAGTCTCTCTGTGAAAGTGACACAGTTGGACTCGGCTGGCGAGCAAATATCGTTACAAGATATAAACTTGAGGAAAGCCTTCAAGAGTACCATAGTAACCGACCAACAGGTTCTATCAAGCAACACCTTGCCAACCGCAATGCAAGAACGCTACCTAACATGCAACGAACCACCGCGCCTACGAGAGATGAACCCTTACAGAGATGACGACAAGGATGCCTTGAAGTTCTACACTGATCCAACTTATTTCTTTGAACTGTGGTGCGAAGGAATGAAGAAAGAAACGGAAAAGTATAAGAAGAAAAAGAAACAACGTGTGCGAGCAGGGACAAGAGCAAAAGCTCCAATCAAAGCCATCAAGAAGAGAACTTACTGCGCTCAAGGAGAGGAGTTCAGAAACCTTCACATAAACTCAATTCCTTCAATACATTCCTTGGAGAAAAGAACACCTGAAACTATTCCAGAAAATGTTCCCGATTCCAAGCAGAATGGTGAAATCCCAGAGGGAGGTGATCATTTAATGCCTTCTCCCCAAGCCCATGCTTCACCAGGGTCTAAAAGGACATCACGAAGGTTCACCCAAAGTGTCAACAGGCCAACATCAGCACCACCACCTCCCCCTATGGCAGGTGTTAAAGCATCTCCACAACAGGGCTATCCTGCTGGAGCACCTCCACCTCCACCACTCCCTGCGGGGGTACCCGCCCCACCTCCACCGCCGCCACCTCCAATGATTGGACAGGGACTGCGCGCAGCAGGTTCTGCTGCTTCTGTAGAGGGACTTCAGCCAGGCATGTCCCAACCTACAGTCTCCCCATCATCAACATCATTGAGTAATTCAGAATCTAGTTCAAGTGTTGTAAGTGAGGTACCAATGCCATCTGAAGAGGTTGACACCAGGAGTGACCTGCTAGCTGCTATACGGCAGGGTATGGCATTAAAACGAAATCTGGGTCAGGAAAAGAAGAAGGATAAAGAGGACAATAACGCAATAATGGACGTAGCATCAATTCTAGCAAGACGCATAGCTGTGGAGTATTCCTCCAGCGAAGAAAGTGACACGGGATCAGACTGGGATGATGAAGATGAATGAAGATGAGTCATTAACAGATAAGATAGGTCAGATTTCAGATGACTGTGAAAAACTCGAGGCAGACAGCTCTATGCTGTGCGCCATGGTTTTTCACAGTCATACGAAATCTTCTTTTACATTTTGTATGAATTAAATGACATTTTTACAATTTATTATTAAATGGTCCATGCAACACAATGTAAGTAATAATATTTCTGATCGAAAATACTAAGTTTTCCTCAAGAGATGTTTGAATTCCAAAAGGGAATAGACATTTTTACTGGAGATCTCTTGCAGAAATTATCAGTTTGATCAAACTCTGAATTCTCCTTTGAAGTGCACAATTTCCTTGAGAGAATTAAGAACTTGATCAGATATACTTGAATTGCTTACAATTTTTTCTTCATTTGACAACATTCCATGTTGCTTAGTCCAATGTACATTTAGCTTTAATCATATGTGACCCTCTTGTCAAAGTGGCTGTCTACATACATTTCAAAATAATCCTAGAAGTAAGAGGTAGGATGCTGTCCATCTTACAGGAGCGTAGCATGCATTTACACACAGGCATACAATTCAAATCCCTGTTAAGCATTTTACTTTGTATTGATTTAGTGAGGAAGTCCCTGAAAAACGAAAAAATGGCATTTCCGTGGCTCTAGATCTCAAAATTTCCTGGGGGAGCATACCCATTTCCAGACCCCGTAGCAGCTCGCCTTTGGTTTTGTTTCAATACAGCATGAAAAAAGCATGCTATGCCCCTGCCATATAGAGGTGTCCTATTCATAGGATTTAGTTATACTGAACTCTGTCTAAGATAGACACACGTCGGACCATCAATAAAAGAGTCCATCTTAGAGAGGTGTCTGTTTCATAAATTTAGTTACAATGAGCTCTCTAAGAATGACACACGTGGGACCAGAACTAGCTGTCCATCGTAGAGAGGACTGTCTTCAACAATGGACATCTGGTGTTGGTCCAAGGCTGTCTGTCTTAGTTTGATTGAGTTTAGTTACTAGAACTCTTTATGCAGCGATCAGAAATTGGAGTGTCTAATTAGCCATATTCGAAACGAGTAGGAAGCTGGGTTCGAGTTGTACCGCAATGCATCTATGGATTGTTTGGAGGGACAGCAATACTAAGAAATATGGAAGATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UPY6	Actin-binding protein WASF3 OS=Homo sapiens OX=9606 GN=WASF3 PE=1 SV=2
Q8VHI6	Actin-binding protein WASF3 OS=Mus musculus OX=10090 GN=Wasf3 PE=1 SV=1
A2VDK6	Actin-binding protein WASF2 OS=Bos taurus OX=9913 GN=WASF2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007990 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for gene29679.t1 in Actinoscyphia liui.

InterPro

InterPro term	Type	Description	Source
IPR003124 all species →	Domain	WH2 domain	Interproscan
IPR028288 all species →	Family	SCAR/WAVE family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12902 all species →	WASP-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0031209 all species →	Cellular Component	SCAR complex	Interproscan
GO:0034237 all species →	Molecular Function	protein kinase A regulatory subunit binding	Interproscan
GO:0071933 all species →	Molecular Function	Arp2/3 complex binding	Interproscan
GO:2000601 all species →	Biological Process	positive regulation of Arp2/3 complex-mediated actin nucleation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06083	WASF3; WAS protein family, member 3	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.