Gene detail

Detailed information of gene29782.t1 in Actinoscyphia liui

Genomic Location: chr10:19979514...20021754
NR annotation: XP_031558110.1, neuroblastoma-amplified sequence-like isoform X1 [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene29782.t1

ATGGCGGCCACCAGTTCTGGTGAGTCGATATTATACGACCTTCTTGTACACGCTGAATGGCCTTTAGACGGGGAAATATTGAACAAACCAGGGTTTGATGTTGGTGAGCTTCGTGGGTCTTTACCCAAGAAATGCTGGACTATTAGTCAAAATTGTTTTCAATGGGTGTTACAAGGAGTACATCAAGTAGTTAGCGGGTCATCTATGATCAATGGCATTCCTGTGCATTTATATACAGCACTCAATGGCAGTAACCAATGGAGAATTGCACTTTCAAGTGATGGGAATCTGTTAGCAGTTTTACAAGAAAGTTGTATTGAAATAAGATCACTGAAAGATGAATTTGGTTCAGTTGTTGCTACATGTAATGTTGATAAAGATCCTTTCCCACAATGGCGTAAGTTAGCCTGGAGTCAAGATTGTTCTATGCTAGCATGTTCTTCAAGTGCTGGTGAAGTAGCAGTGTTTGATCTTGCTGGAGCACTTCTTTTTACTATCTGCCAGCATTCATCATCAGTTAGTTTGCCATTAGATCTCAGTAAAGCCGTATCTGGATTGGTATTTGTTGAACACAAGACTAATGCTTTGTGGTCAGCTGAACTGCTAGTGATAAAGTATGACGGTAGTCTGACCAACTACCTTGTCAGCCCCACCAATGGCTACCAGGAAAATCACCAGTTTTCATTCAGTAATTCTTTGCACCATGGCGTCTACTGCGTAATGTACCAGCCACAATACAAGATGTTGATTCTTGGAACTGCTGCAGAAATACACACAGACACTTTCTCAGACATGCCTTCAGCTTTGGACTGTGGTCTGTCATCATGGAGAATTCTAACAGGATTCCCTTATTATAAGATGATCAAAGATGATGATCATATTGATATTCAGGCTGGTTCAGATATGCTCAAAAGAATTTCCAACTTAGCATTGTTTCGCTCAACGACAAAGAAGGATGGAGTTTTCTATGGCAACATGTCTCCTGATGGTACCAAACTGGCTGCACTCCACTTGTCTGGGATGCTATCCATATGGCACATCCCGTCATTCAGACACTGCTTTGTATGGGGTCCTGACGACCAACCATCAGTTGAAAGGAATGAATCTGGTTTGAATTTCCAAGCATCTTTGACATCTGCTTTGCCAGATAAGGAAAGTGAATTCAGTGGTTTGACAGATGTGAGCTGGTGGTCAGCTGAAGTGTTGACACTTGCACACAGTAATGGAGCTGTCATGGTGGCACCTCTAACAGACAGTTTATGCAATCTACTTGGACAGTCTCCAGAGTGGTGTGAACCATGGCCTATCATCACTGTAGCTCATAATGGTGGATTTCTCATTCTTGAGTGCGAAAAGTCAATCCAAACTTGTGGATCTAAACAATCACGTGATGATGATATGGAATCAACAGTCAACCACTCAGGTGATGATGATGACGACGATGATGATGATGATGAAGATGACGTATCTTTTAATCACAAAACCAGACAATTTGCCAAACAGGTCCTGTTCTTCCTTACTGAAAGTGAACGGTTTCAACCTGCTATCAGAAGAACAAAAGTTCTGTATAAAACATATCGATTGGTTTGTATCCGTTCTACAACTCCAGAAGAGCTTTATGCAAGAAAGATTGAGTTAGAGGAATATGGCGATGCCTTGACGCTAGCTCAGACATATGGCTTAGACTGTGATCTGGTCTACCAAAAACGATGGAAAAAATCTAAAGTTTCTATTGCATCTATCCATGATTACTTGAGTAAAGTAAAGAATAGACTGTGGGTTCTGAACGAATGTGTTGAGCGAGTACCAGACACCTTTGAGGCTGCCAAACAGCTTCTAGAGTATGGACTCCATGGTACACATGCCGAGGTGCTTGTTGCACTTGCAAAGGGGGATAAAGACATTGGATTTATTATTAATACTGAAAGTACAGATGTACACGAAGAAAACTGTAACAATGAAAATGCTGAGGATTTGCTGGTGTTTCCAAGCTTTAATTTGGAACAGCGTGATATTTGTCGTTATCGCCTTAAATTGTTACAGTACCTGGATAGATTGTCTACCTACGAGGTTATCTTAGGTGGACCTCACATTGCGCACGAGGAATACTGCAGAGACTTCTTCCAACAATTCAGAGAAGTTAACATTGTTCAAGCTGCCGTGGAGTATGCTAGGGACGGCGACTGTGAGGCTCTGGATGCTATCTTCACATATAACGGCTACCATACTCTTCAACACAGGCTGGCTATTCTCAGTAACTTACCTGAGACAAAACAACCTGCAGAGTACAGATATCTACTCCCTGAGGCTGGGACAGGACCAGGAGAACCTGAAGTGTTTGAGTGGGAGCAGCATTCATGGAGAACAGAAGACTGGTGTGAACAACACGCATGTAAACAAGTGTTGGACTGGGGTGATGATCAAGATAGTGAAGACTTTCTGTACAAAGACAATCCTAGTCTACAGCAATACTCCAAAGTTCCACTCACATCATCATTGTTGACTACGTGGTATATCAACAGAGCCGCAGAAATTGAATGTCTCTCACAACAGGTATTGAACTCACTAGAACTAATCAGACTGGCCAAAGAAAGAGGAATTCAGGGTCTTGATGTGTTGTATGATGACCTCATCACCATGGAAACCTTAATCTATCAGTGCTGTGTAGATGTTTATCTGAGTCTCGAAGATTTCCAAAAAATGGACGACATAGATAAGCTGCGTATGATTCTTGCCAAGTCTAGTGAGGTCTGTTTTGTTGGTGATTTCAAACGTTGGGCTTTGCCGTTCTTAACAAGAGTTGAAAAGAGGAAAGCTGGTTCCCAAACCCATTTACTCCACCAGTACCTCACTGATATTGCTAAGTCTGATTTAACATACGTCTTGAAGATTTTCCAGAATTCTACTCCAGAACTCAAAGAACCTATCATAGCAGACGTTGCACAGCAAATGAGGCTCGCCTTGGAGTGTATCTACATCTGCAAAAGAGATGACCAGATTCCTACAGCTTTCAGTATTCTAGAGTGCCTACCTGCACCAGATGAAGATATTTTATCAGATCAAGTTGGTGAACTTAATAAGCAAATTGATCAACTTGAGGTCAACTTATGTGCATGTGAGATTCTTGCCAAACATAATCTTGCCAAACCTGTGTCATATATCCTGGATACAGAGGGCAACAAAGAGGAAGCTCTGGAACTGTTTAAGACAATGACATCATTCACTGTCAATTGCTCCCCTCCAGCCAAGGAAACAAAGTGGAAAGAGCTGCTCAACGACATGTTAACTTTACAAGAACAAGTTTATAAATGTATTAAAATAAGCACATGTTACGAGATATACACTACAGCATTGCTACACTCTGGAGTAAAAGAAAACCTATCATTTGCTGGACAAATGTTATACAAGTCAACCGCAGAAGAAAGTCAGCCATCTCCAGACAACAAACTGTCAGGACCTCGTATACCATTGAGCTGTGGTATAGACCTGGTCCTTCATGCTAGTAGAGAATACTTTAACTCATCTAATGATCTATCAGACTCCGCCATGGAATTGGCCAGGAGCTGTTTGAACCTGTTTGAGGAGCCCCCAAGTAGGATACAAGAAGAATTCAACCTGATTGGTGCGCTTGCTTTGCTGGATGACTTTGGTGTACAAGTCCTACCCCTGGAAGTTCGTCTTTGTGATGACAAACTTAGTTTGGTACAACGTGCTGTAGACAGTTCACCAACTGCATACAAGAACACTGAAAAGGTTCTTCATTTAGCCAGTTTGCTAGAAGTGTCAGGTCAAGATGAACACACAAGAAAAGGAAGAGTGCTTGTACTCTTAGCAGAGTGTGCCCTCAATAAGAAAGATTTCTCTGCGACAAACTTAACCTGTCAACAGTTGATCAAGGAAGGTTATGAGTCAGCCTGGGTTGTGTGCAGGATCCTTGGTGAGAGTGAAGATTATAGAGGTCTCAAAGCCAGGCAGTCTCTACTTGCATTTGCGCTGACTCACTGTTCACCAGATGTAATAGAACCACTTGTACATAGCAGAAGCCTGGTAGAAACACAGGTTTTGTATGAAGAACTTGGACAGCACATGGATAAAACAGATGAAGAGGATGATGCAAAAGAGGTGAACGGAAAATCTAAGGAATCCTTACTACATAAAATGACAGCACGTGATTGGTGGAAAAATACTGTCACATGGATACGACCTTTTCATTCCAAAGCACATGTCAATGGAGACGGCCAATCAGAGGAGATCTGTCAGTTATCCAACCAATCATGGCATCCCTTCTACCAAGGTTTAAGTACAGACGACAAGCTAGTGGTTGGTCTGCCGTATGAGGAATGTGCTGTGAATGGGTATCTTGACAGTTCGTTTAGTGTTAGCCACTGTCTTCTGAGGACTCAAAAACTGTTAGAGAGTCGTGCTGAGGGTAGTATAGAAGAACCAGCTACAGACGTGTTAATTGCACTTGCCAAGTCTGTGTTGAACTATGATACTACACAAGGGCTAGCATACCTCTTAGCTTTACCTAATCTGTCAGAAGCAAACGATCTGTTCAAGTCGTTGAGCAGTACCTATGTCTCCCTACACATGTCAACCTACTGCTTTGCGTTGGAGATTTACACCAGAGTTAATCACGATGTGACGTTAGACCAAGCTAACTTCTATTGTAATTCACCCGATGAGCTCATCAACTATGTCATGTCACACGTCGTCCATGGTACTCCGTCTGATTGGCCTGCAAATCTACAAAGTGACTGTAAATATTTTCTGAAGTGGTATAACCAGATGACGGACTTTGCTCAGGCCCAGTTGTTACAAAGCCTTGGAAGGGGTGTGGATATCAGTCGTTTTGCCTGTGACCTGGAATACAAGAAGGATACAATTCTAGGTTTAGCTATGACCGTAGAAGAGAATATCTTCGCTACAGCATTGTCTTTGGCCGAGAGATATGACATTCCTGAATGGGATCTTCTGATTGGACATCTAGAATGGTTGTTTTCTGATAGTGGTCTTGCAACAAAAGAAATTCAAGAGCGAGTGAACAGCCTTGGTGTTATGACATGTTTAGTTCAACACCCTGTCCAGACATGTGTGAGGATGATTGAGAACGTCTACCCTACAATAGATGGCAAAATGCATGCTCGTTTGATCTACTACTTCATGCTACTACAAGAATGCCAAGACAGCAAGAATGCGCCTGATGCACAAACACACTTAAAGATTCTTAAGAAAATCAAATCATCTGCTCCAGGTCTGGACTACAAACTACTCATCGATGGTGATTCTCCTCTTCAAGTGATGTCATCAGTGCTCAGCAGCACTAACGTGCACCTACTGGCTAAACTTGCACCTAAGATTCCTACCAGAAACAACACTGTCATTACTTCCAGTGGAATTTTCCAAGTTTTTACAGAAAGGTTATTTTGGGAAGGAGAGCAGAAAGCTAAAGATGCTGAGGATGACAATGGGGTGGACTGGAATCATCGCTATGAAGCATGCCACAAGTTCCTCTCGCGTCTCACCCCAGCTGACTTGACTAAACTTATTGATGTTATCACATTCAGTGAGAAAGCTATTGACACACTGCTGTTAGAAACACGAACAGACATAGTAAATAGGTCACTGAAATACGCACGCCAACAGGATGCTGCACGTAAGAAGAAAGGCTTAGAGGAAGAACCGACTGAATCCAGTGGCCAAAATACTGAAGACTTCACATTTGAGAAAGCCGTTGTTCATTTCGAGCATTCAGGTCGCCATCTTGAGTCCATGACTGATGGAATAGTGTATGCACTGATTGACGCTGACGAGGACAACGAGACTGAGTATGCACGTTGGTATGACCTATCAAGATCAGATCCTGACAAGATCAATCTGTTAGTCTCACAAATGCTTGTTGATGGTGCTTCTATTGAAAGCGTTTATGACTTACTAAGATTGGCATCCAGACAGACACTACAAACATGGACACTTGTTGATGTTGTACAGGAAACACTGAAAGTACTGTTGAACACTTTAAGTAATAAACCAAGTGAAGCACTGTTTTCCACAAACAAGAGCCCCATGGAAATCATTGAGACTATAATACAAGCTGTGAGTAGTGACATCACCAATGGAGGTACACTGATCAACCAAGATGACATCCTGTCTACATTAAGACCTTTCTGTGCCGATGTGGTCGTCCCTGCTAAAGTCAAAACTACAGTTCTACACATACTGGAAGGCTCGTTTAATCTTAGTGGGGAAGATACATTCTTGTTGCTGTTCTGCCAGACAGAGGCCATTGTATCAGCACAATGGAAGAGAGAGCTTTCTCCAGACGACATTGACAGCGATGAGAAAAGGCATGTGTTGTTCTTGGAACAACTAGAGGAATCGACTTCCATCGACCAACTACTCCCTCTTGCAACCTTGCTCCACATTTGGCCAGTTTTAGCAGCAACTGAACTCAGTGAGCACGACCCCGAGATCAATCCCTGGATACAGCTACTAATGAAGATAATTGAATGTGGTGATGATGGCAGAGAATTCCTAACAATAATGAACACCATCAAGATGTCCACTGCCCTGGGTGTGCAGTGCTCTCTTCATGTGTTCAACGTCTTGTTGGATAAATGTCCCAAAGTGGTTGCTTTGAAGTTTGGTGTGATGACAGGCTACGAGGAACTTCGACAGACTGTCTTTTCCCTCATGAGAAATTTAGAGGTATCCCAAGAGACTTGTGACGACGAACTCTTAGAAAGGCTTCTTCTTAGCGACTCAGCGGCAGAAGTAGCCTCGACACCATTCCTTAAGCCGTTTATTAATTTCGTGTTGAGCTATAAAAACCAAGAAAGCGAGTCCAATGACTTCGTGCAACAAGTTGCATTGCAGTTACAAACTGCTGGTTACATGGCAGAGGCGGGGACACTATTGTCCCATCACAACGCTGTACACCCAGTATTAAGGACCTTGGATAGTGCCTTAGAGGTACTCTCTTATTGGTTGAAAAGATAA

Transcript

gene29782.t1

Protein

gene29782.t1

MAATSSGESILYDLLVHAEWPLDGEILNKPGFDVGELRGSLPKKCWTISQNCFQWVLQGVHQVVSGSSMINGIPVHLYTALNGSNQWRIALSSDGNLLAVLQESCIEIRSLKDEFGSVVATCNVDKDPFPQWRKLAWSQDCSMLACSSSAGEVAVFDLAGALLFTICQHSSSVSLPLDLSKAVSGLVFVEHKTNALWSAELLVIKYDGSLTNYLVSPTNGYQENHQFSFSNSLHHGVYCVMYQPQYKMLILGTAAEIHTDTFSDMPSALDCGLSSWRILTGFPYYKMIKDDDHIDIQAGSDMLKRISNLALFRSTTKKDGVFYGNMSPDGTKLAALHLSGMLSIWHIPSFRHCFVWGPDDQPSVERNESGLNFQASLTSALPDKESEFSGLTDVSWWSAEVLTLAHSNGAVMVAPLTDSLCNLLGQSPEWCEPWPIITVAHNGGFLILECEKSIQTCGSKQSRDDDMESTVNHSGDDDDDDDDDDEDDVSFNHKTRQFAKQVLFFLTESERFQPAIRRTKVLYKTYRLVCIRSTTPEELYARKIELEEYGDALTLAQTYGLDCDLVYQKRWKKSKVSIASIHDYLSKVKNRLWVLNECVERVPDTFEAAKQLLEYGLHGTHAEVLVALAKGDKDIGFIINTESTDVHEENCNNENAEDLLVFPSFNLEQRDICRYRLKLLQYLDRLSTYEVILGGPHIAHEEYCRDFFQQFREVNIVQAAVEYARDGDCEALDAIFTYNGYHTLQHRLAILSNLPETKQPAEYRYLLPEAGTGPGEPEVFEWEQHSWRTEDWCEQHACKQVLDWGDDQDSEDFLYKDNPSLQQYSKVPLTSSLLTTWYINRAAEIECLSQQVLNSLELIRLAKERGIQGLDVLYDDLITMETLIYQCCVDVYLSLEDFQKMDDIDKLRMILAKSSEVCFVGDFKRWALPFLTRVEKRKAGSQTHLLHQYLTDIAKSDLTYVLKIFQNSTPELKEPIIADVAQQMRLALECIYICKRDDQIPTAFSILECLPAPDEDILSDQVGELNKQIDQLEVNLCACEILAKHNLAKPVSYILDTEGNKEEALELFKTMTSFTVNCSPPAKETKWKELLNDMLTLQEQVYKCIKISTCYEIYTTALLHSGVKENLSFAGQMLYKSTAEESQPSPDNKLSGPRIPLSCGIDLVLHASREYFNSSNDLSDSAMELARSCLNLFEEPPSRIQEEFNLIGALALLDDFGVQVLPLEVRLCDDKLSLVQRAVDSSPTAYKNTEKVLHLASLLEVSGQDEHTRKGRVLVLLAECALNKKDFSATNLTCQQLIKEGYESAWVVCRILGESEDYRGLKARQSLLAFALTHCSPDVIEPLVHSRSLVETQVLYEELGQHMDKTDEEDDAKEVNGKSKESLLHKMTARDWWKNTVTWIRPFHSKAHVNGDGQSEEICQLSNQSWHPFYQGLSTDDKLVVGLPYEECAVNGYLDSSFSVSHCLLRTQKLLESRAEGSIEEPATDVLIALAKSVLNYDTTQGLAYLLALPNLSEANDLFKSLSSTYVSLHMSTYCFALEIYTRVNHDVTLDQANFYCNSPDELINYVMSHVVHGTPSDWPANLQSDCKYFLKWYNQMTDFAQAQLLQSLGRGVDISRFACDLEYKKDTILGLAMTVEENIFATALSLAERYDIPEWDLLIGHLEWLFSDSGLATKEIQERVNSLGVMTCLVQHPVQTCVRMIENVYPTIDGKMHARLIYYFMLLQECQDSKNAPDAQTHLKILKKIKSSAPGLDYKLLIDGDSPLQVMSSVLSSTNVHLLAKLAPKIPTRNNTVITSSGIFQVFTERLFWEGEQKAKDAEDDNGVDWNHRYEACHKFLSRLTPADLTKLIDVITFSEKAIDTLLLETRTDIVNRSLKYARQQDAARKKKGLEEEPTESSGQNTEDFTFEKAVVHFEHSGRHLESMTDGIVYALIDADEDNETEYARWYDLSRSDPDKINLLVSQMLVDGASIESVYDLLRLASRQTLQTWTLVDVVQETLKVLLNTLSNKPSEALFSTNKSPMEIIETIIQAVSSDITNGGTLINQDDILSTLRPFCADVVVPAKVKTTVLHILEGSFNLSGEDTFLLLFCQTEAIVSAQWKRELSPDDIDSDEKRHVLFLEQLEESTSIDQLLPLATLLHIWPVLAATELSEHDPEINPWIQLLMKIIECGDDGREFLTIMNTIKMSTALGVQCSLHVFNVLLDKCPKVVALKFGVMTGYEELRQTVFSLMRNLEVSQETCDDELLERLLLSDSAAEVASTPFLKPFINFVLSYKNQESESNDFVQQVALQLQTAGYMAEAGTLLSHHNAVHPVLRTLDSALEVLSYWLKR

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5TYW4	NBAS subunit of NRZ tethering complex OS=Danio rerio OX=7955 GN=nbas PE=2 SV=1
A2RRP1	NBAS subunit of NRZ tethering complex OS=Homo sapiens OX=9606 GN=NBAS PE=1 SV=2
Q9FIN7	MAG2-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=MIP2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002303 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08314 all species →	Sec39	Secretory pathway protein Sec39	Family	Interproscan
PF15492 all species →	Nbas_N	Neuroblastoma-amplified sequence, N terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013244 all species →	Domain	Sec39 domain	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR029145 all species →	Domain	Neuroblastoma-amplified sequence, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15922 all species →	NEUROBLASTOMA-AMPLIFIED SEQUENCE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0070939 all species →	Cellular Component	Dsl1/NZR complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20473	NBAS; neuroblastoma-amplified sequence	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.