Gene detail

Detailed information of gene29835.t2 in Actinoscyphia liui

Genomic Location: chr10:20952546...20959994
NR annotation: XP_020912193.1, serine/threonine-protein kinase 40 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene29835.t2

GTAAACATCAGATAAAGGTTAAGACTATGCGTTCGGGAAATATTACAGCGATCGGTAGTAAAAGAAAGGCGAATTCGCTCGACAATGGAGCTTCGCCTTCGACCTCAAAACGAATCAAACGACGAACTGGCCCAAGTGGTTTAAAACGAGCCGGCCCATACCTTCTTGGCTCGCGATTAGGGAACTCACCAGTTAAGAGTATCGTCCAATGTTTAGCCAAGAAGGTAGGAACTGACGATTTCTATTCGATCAAAATTTTAACCCTTGGAGAAGTCGGCCATGAAACTCAAGACGACAAACAAGGAAAAATGCTTTTACACACAGAATACTCTCTGCTTTCGCTTCTCCACGACGAAGAGGGAGTTGTACACCATCATGGATTATTCAAGGATGAATATTTTGAAGAGTTACCGCAAGAAACTGAAGCTCAGAGCGACGCTTCTAGTGGCAGTGGATCAAAAAGTCGTGGTAGAATTCGACATCGCTTGTGCTTGGTCCTGGATTGCTTGTGTGCTCATGAATTTGGTACAGGAACTCAAGATTTGATCAATCTGCAGCATTATGTTATTCGAGAAAAGAGGTTAAACGAAAAGGAAGCATTGCTTATATTTCATGATATTGTTCGGGTAGTGGAGTGTCTACATCAGAAAAATATTGTTCATAGAGACCTTAAACTTGGAAACATTGTACTAAATAGAAGGACTAAAAAGATTACAATAACAAATTTCTGCCTTGGAAAACATTTAATTCGAGAAAATGATCTACTTAAAGACCAACGAGGCAGCCCAGCCTACATTAGCCCTGATGTATTGAGTGGTGCTCCATATTCAGGCAAGGCTAGTGATATGTGGGCATTGGGTGTGGTGTTATACACAATGCTATATGGACAGTTTCCATTCTATGACAGTGTTCCTCATGAACTCTTCAGGAAAATCAAAAGTGCAGAGTTTATTATTCCAGGGGAAAGCCCTGTTTCTGAGAACACCAAGGATCTGATTCGTTTACTTCTGACTTTGGATCCAAACAAAAGACTCACAGCATCAGAAGTGCTTGGTTTTCTGCAAAACACAATGACGTCATGGTATCACCTAGCATGTAATGGGGAATCACCACAAGTAGTCCCCGATGCCAAGGACCAACAGGAGGACACGGCACAAGAGAAAGACAAATCTACCATTGCATCAGACTTAGAGCACAGATTCCACAAACTAAGTGATGAATTCTTTAAACAAGAATCACTAGCGAGTAAATCACCAGAGGTGGCGTGTCAGCCTCCTATCAGGAGAATTTCAGAAGATGCCAGGCCCTTGACTGCTGCTGAAGTGCTTACGCATCGACACTTGTTATAGACAAGTATCCTTAATTAATTAATTAATTTTGTGTAATTTCATGATTAGCAGAAATGCTTGTGCATCAATACTTATTATAGACTAGTAACTTTAATTATTGATTGTATTATATGTATACTAGCTATTACGTCTTTTATATGGACTCATCCAAGAATCTTATTTCACAGGGAATTGTGTTAATAAAATCCATGAATGGTTTTTGTCAAATTTCCATTTTGAAGCTACATATATTATGTACGGGAATATAAATGGAAACTAGCGAGTAAACTAGTATGTATGGGAATAGTTCGTTTTTCCCATTGATTTCAATTGGGAATATGACAAAAACCATTCATGGATTTTATAAACAAAATTCCCTGTGTTTGGATGGGCTGCTTAGGCCATCCCTACTGTTTTTTTCTGTTTCTCATCAGTGGGGTTTTCTAAAATTCGGTCGGTCAGTCGGTGAGGGGGAAAAAAAACCCGGCGGTGTATGGAACTAGTTAGGCGCGGTTAGACAGGCTTGGGTTTTTGCAACCAACATGGACGATGAAACAATAGATGTTGTTGTTCGTATACGCTATAAACATGGAATTAATAATGCCCGGAACTACTGTGCAATTACCATCAAGTATGAGCTTGTTGTTGTTGCTGTGGGGGTGAATTTAAGCACAGAGAAATGAAGACACCCCTCTCCCCAATTTTTTTTCTTCAAAACGCCACAAAAATCAGTTGGTCGAACGACGAGAAACCGAAAAAAGGTAGGGATGGCCTTATGAAGAAACATTAGGCAACCATGCAATATATCCATTACATGTAAATATACAAGAATTCCTGTAAAATAGCGTAATATTAATGTTTACTTTAACACCGATTAATGGTGTTCTAATTCTGGGGGTTGGGTTCAAATGAGGATATTACTTTAACCCCGCATAACCATCATACAGACTCGGCGCATTTATAAAAACTCAGCGCATTTAGCGAATATATAATTACTTAGGGGGTGGGGGTAGAAGAACATTAAACTTTCATGTCTATTGGATGTAGCACGGCTTACGGTAATTTAGCAATAAGCCGTGATGTAATCCAATGACTACTGGGAGAATTGTAAATGGCACTAAATGACGCAATCATTGAAAAATGTACTGCGCATGTTCACAAAGTTGGCGGGAAATCTCGTCCCAAGAGCCCGCTTTCCTCTTGGTCAGCACCGAGGAACGACCAAGAGGTAAGTACTTGGTGTATGCAGCACTAACTGTATCAATATATATATATAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TNL4	Serine/threonine-protein kinase 40 OS=Rattus norvegicus OX=10116 GN=Stk40 PE=2 SV=1
Q7T0B1	Serine/threonine-protein kinase 40 OS=Gallus gallus OX=9031 GN=STK40 PE=2 SV=1
Q7TNL3	Serine/threonine-protein kinase 40 OS=Mus musculus OX=10090 GN=Stk40 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007404 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR024236 all species →	Family	Serine/threonine-protein kinase 40	Interproscan
IPR024104 all species →	Family	Pseudokinase tribbles family/serine-threonine-protein kinase 40	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22961 all species →	SER/THR PROTEIN KINASE-TRB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16312	STK40, SHIK; serine/threonine-protein kinase 40	EC:2.7.11.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.