Gene detail

Detailed information of gene29902.t1 in Actinoscyphia liui

Genomic Location: chr10:21681436...21685241
NR annotation: XP_020914145.1, dnaJ homolog subfamily B member 4 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene29902.t1

AAAATGTTCAGCTAACGTATCATTTACCTCGTCTCTCTAGACAAACCTCTGTACTGCTGTAAAAGACTAAATCTACGGCTCTAAATCTACAGCCATCTTCGTAGACAATTTTACCAAGAGAGCCAAAATGGGACGCGATTTCTACGCTGTTCTTGGCGTACCAAGAAATGCCTCTTCAGAAGAAATCAAGAAAGCGTACAAGAAACAAGCAAGGCTTTATCACCCAGACAAAAACAAAAATCAAGGAGCTGAGGACAAGTTTAAGGTCGTTTCTGAAGCCTATAAAGTATTAACTGACCAGAGAAAACGCGAAATATTTGATATGTGGGGCGAAGAGGGGCTGACTGGAAATTTTGGTACTGTCGGCAGTGGATTCCCATTTACAGACGATCCAATGAAAGTATTTCGAGAAGTATTCGCCGATGAAGATCCTTTTAAAGAATTTGACTATTTCTTCTTTGGAGGTCTGGGAGAAGATTCTACTAATTTCTCCAAAGTATTTGAATCTCATTCCTCTAGCTCATCAGCATTTGGTTGGAAAAGCTTTGGCGATGGATTTGATTTTAGTTCACCGCCCGATCCATTTAGTAAACAAGAAACATTGCCACAGGATCCGCCTATTGAACAACCGTTACCTGTTACGCTAGAGGAACTATTCACTGGTTGTACAAAAAAACTGAAAATAAATCACAGAGTTTTATCACAAAGTCATAATTATGTCCAAGAGGAGAAAATACTCCAAATTGACGTGAAACCTGGATGGAAATCAGGAACTAAAATAACTTTCCCCCAAGCAGGGGATATGAAACCAAGCGCAATTGCTGCTGACATTATCTTTGTAGTTACGGACAAACCCCACCAGTATTTCAGCAGAGACGCAGATAATAATTTACTTTATGTTGCAAAACTGAATTTACGAGATGCACTTGTTGGCTGTATGGTAAATGTACCGACCATCGATGGAAGAGTCTTGGCAATTCAAGTTAACGAAGTTATTCAACCTGGAGCGCAAAAGCGAATACCTGGTGAAGGACTACCGATTCCTAAAAGGAATGGAGAAAGGGCAGATTTAATTGTTGCATTCGATGTTGCATTTCCCACAAATTTATCCAATGAACAGAAAGAATTCCTTGCAAATTTGCCATTTTAGAATCCTGCATGAATTAGTTAATTCCACCATGATTAGTAAAGATTAATACCATTATCGGGTTGGTATCTCACTCCCCCCTGGTCTCATTTTATACAGACTTAACTTATTTGTGCAGAGAATTGTCACTACTCTTTGGTGAGGTTCTAAATTTAGAGTGTGAGAAAGGGGAACCTCGAGCAGCCCAGCTGACATACAGTCTAATCCCAGGGCCAATAATGTCATTAGAAAATATTATAACTACAGTCGAAGCTCCCGTAAGCGAACACCCTCCGGACCAAGTGTAAGTCAGTCCTAGCTCTTACGGGAGGTTAATAAATGTATTGTTTATATATAAGGAGAAACCTCCGGGACCACGGTTTGGTGTCTGCTTAATATGGGAGGTGTGCACTTATGGGAGGTGTCCGCTTATGGGAGCTGTCCGCTTATGGGAGCTGTCCGCTTATGGGAGGTGTCCACTTATGGGAGGTGGTGTCCACTAGTGGATGTTCGACTGTAGTGGGCCCATGTTTGAGTGAAAAATGAATTATGAAGTTCTATTTTATTTTAAAGCATCAATTTTGGGATTTTGAATTGAACGGCCATAATTTGAAGTACAATACCACCATAAACAAATTAAAAGCCAGTAAGTAGAAAATTAAGATTAGGAAAAAGTGATTGCTTTCAGTGCTTTTTTCATATACAATAAATCCAGGCGACGAAGAATTAAACAGAGTTGCCATTTATATTTGTATATAATGCCTAGAATATATAGCTAATTGACAGTCTTTAAAAGTACAGTCGACAGAATTTATAAAGTATCGAGGAATGATAGTCAGTGTGTATAGGTAGGTATATCAGAGTGAGGGATTCAGTGTATTGTTGTTTTACGTATATAAAGTTTTCCTAAAGATTTTGTGTTCAATTTGGTTCAATAATGTTATGTTATGATAAAGTTTTGGACTGGTTCTCCAAGTATGGTTCATTTATTTTCAATATCATGTTAATCTGGGCATATTATATTTTTTTAAGATTCAATTATTACAAAGAAGGAAATGGACTGGACAAGCAATGGACTGCTTGCCTCAATGTAAATAAATCTCCCATTTCAATCCTCTTTGGGAAAAATCTGTCTTTATTTGACGTACATCTGTAAACATACTTTTGTGTCTTCTTAATTAAAGTATTTCAAACAAAGAATCTTATTCCCCAAGAGGATTGAAATGGGACAATTAACATTGAGGAAAGTGAAATCAGTTTAATGTATGTCTGCTTATTTTATAAGTGGAAACTAGGTCCTTGTATTTTGTGCTTGTGTTTATGTCAATTCAGTCACCAGATTTGGAAACCAGGACACCAATGTTTTTAGTTTTTTAATAAAATAATGTCAAGTAGAGTACAAACACTAAATGCATGCAATGTAAATAGTACTATTTAGTACTAAATAGTGCTATTTATATTGTTTTCTAATGTTTAATTACTGCTATTTAGTATTTATTAGTGCAAAACATTGCATAGTTTTGGTGTTTGTAGAGTGCAAACAATATATCCGTGAAACTACTTAATAATTGTACTATTTAGCTAGTACTAAATAGCAGTGATGAAACATTGAAAAAAGAGTTAAACGCTTAAAAAGAGTACTATTTCATGGATATTAATGTTTGCACTCTACCCTAAGGAAGAACTATAATGTACTTGAACTATTTAGATTGTATAGTTGTGTGTTTTGTAAAGATTATATATTTTGAAAATGTCAGTAGTAAGTAGAATACTTTAGACTATACTATATACACTGGTCAAGAGATGAAAGATAAAGAAGGGAAATTTGAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R8J8	DnaJ homolog subfamily B member 4 OS=Pongo abelii OX=9601 GN=DNAJB4 PE=2 SV=1
Q9UDY4	DnaJ homolog subfamily B member 4 OS=Homo sapiens OX=9606 GN=DNAJB4 PE=1 SV=1
Q9QYJ3	DnaJ homolog subfamily B member 1 OS=Mus musculus OX=10090 GN=Dnajb1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001066 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan
PF01556 all species →	DnaJ_C	DnaJ C terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR008971 all species →	Homologous_superfamily	HSP40/DnaJ peptide-binding	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR002939 all species →	Domain	Chaperone DnaJ, C-terminal	Interproscan
IPR051339 all species →	Family	DnaJ homolog subfamily B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24078 all species →	DNAJ HOMOLOG SUBFAMILY C MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0051085 all species →	Biological Process	chaperone cofactor-dependent protein refolding	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene29902.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.