Gene detail

Detailed information of gene29904.t2 in Actinoscyphia liui

Genomic Location: chr10:21697602...21708281
NR annotation: XP_020907050.1, guanine deaminase [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene29904.t2

ATGGCTTTATGTGACCAAGTGTTCTGTGGCACGATCGTTCATTCCACGTTGGAAGATCCAATGAGTGTTGTTCAGAACAAAGTCATTGGGGTAAACACTGAAGGATGCATCATGTTCGTAGATGACGTGTCAAAGTTGGATCAGCTCAAGACAACGTTTGATTTCAATGATGTTCAAATAACTCATCTTACAGATCACCAGTTTATTATACCTGGATTTATTGATACCCACATCCATGCTCCACAATACTCGTACGTTGGAACTGGCTACGATCTCCCTCTGTTAAAGTGGCTAAATAAATACACCTTTCCTGTCGAATCCAAATTCCTGGACACTGAGTTCGCTAGAAGGATTTATCGTAAAGTTGTGACACGGACTTTAAACAGTGGCACCACTACCGCTAGTTACTTTGCCACCATTCATTACAATGCCACCACAGTCTTGGCTGATGTTGTAGAGGATCTTGGTCAAAGGGCTTATGTAGGGAAGGTCTGCATGGATACAAATTCACCAGAGTACTACATAGAAACCACTGAACAGTCTATTCAAGATACCGAGAAGTTCATCCAGTATGTCCAGGCCAAAAATAATCCTTTAATCACGCCTGTAATTACACCAAGATTCCTTGTCTCATGTACTGGCGAGTTGATGAAAAACCTGGCTGACTTAGCCAGAAAATACCAACTACCAGTACAGTCCCACTTGAATGAAAGCACCAATGAGATCAGCTTGGTCAGCAAGATGTTTCCCGACTGTGACAATAATACACAAGTGTTTAAAAAGTATGGCTTGCTGAGTGAGAAATCCTATATGGCACACTGCTGTCACATGTCGTCAGAGGAAGCTTGCATGCTTGCTCAAACTGGCACAGGTATCTCCCACTGCCCCGCATCGAATATCAACCTCAGGAGTGGTCATGCAGACGTGAGGTTCTTGGAAAATAACAACATCAAACTAGGCCTTGGTACAGATATAGCTGGGGGACACTCCTATTCCATGTTAAATGCCATCCAATCTGCCATCAGTGTTTCCAATGTGATTGCTATCAATACCGATGGCTACAAGCCCATCTCTCACCGAGAGGCTTTCTACATGGCCACACTTGGTGGCAGTAAAGTTCTTGGCCTTGACAAGAGGATTGGCAGCTTTGAAGTGGGCAAGGAGTTTGATGCAATCTTGGTTGATGCTGTGGCAGATGATTCACCGTTTGACTGCTATGATGATGATGATATGGAAGACATTGTTCAGAAGTTCTTGTACTGTGGAGATGACAGGAATATCAAGAGGGTTTTTGTGTCAGGCAAATTTGTTGCTGGAAGAGATCACAAGAATAAGAATAAGAATATAATCATTGTCCTCTCAGCACGAACAAGCATTGGCACAAGGACTTATCAGACGCGTGTTATTTATAATCGAGTTGGAAAATGTGGCAGTCGTTACATTCTTGAGCTGTTGTACAGACTAGCAGAAAGAAATGGTTTTAAAGTAATAGATTCCATTCAGGAAGGGACACTGGACTCTCATAAACGAAAATTCTCCGCTAACGAGCAGAGGAAGTTTGTCAAGTATATAACTCAAGAACCCGAGCCACCATTTGTATTTCATGGACATTTCCATTATATTGACTTTACTAGGTTCAGCGCCGCTAATCCTGTATATATCAACCTTATAAGAGATCCTGTACAACGCTTTATGTCAGCGTATTATTTCCGTCGTTTCGGTGATGATAGAAACAGAACGTGGAGTTTTCAAGGCACCGTAAAGGAAAAGAATATGACATTAGACGAGTGCGTTCTAAAGAGTCATCCAGAGTGTACGAATCCCAACAAAGTTCTCTACATTCTTTCTTATTTCTGTGGCCAACCAAGGGGTTGCAGGGGTTCCAGTATCAAGTCTTTAAGAAGAGCCATTTTAAATGTACAACATAAGTATCTTGTGGTTGGAATTCTTGAAGATGTTCACAGTTTTATCAAAGTTTTAGAAAAACTTCTTCCTCACTTGTTCAAAGGAGCTTATGAATTAAGAACAAAAACTGTTTCAGAAAGCAAGAAATCAACCAAGACACGAAACAAGAGGGTCCTTTCACCGAAAGCTACAAAAATCTTGAAGCACAGACTTCGTCTGGAGTACAGGTTTTACAACTTCGTGAAGGTGACATTTGACAAACTGAAGAAAACCCTCGAGATATAA

Transcript

gene29904.t2

TCACACTCCACTGCTTTTGGCGCGTCGTTGTATCTTTCTTTGTCAAACATTACCAACAACCTACTGATCGGAGGTCTACGGAGATCAAAACGGTTACGAAATGGCTTTATGTGACCAAGTGTTCTGTGGCACGATCGTTCATTCCACGTTGGAAGATCCAATGAGTGTTGTTCAGAACAAAGTCATTGGGGTAAACACTGAAGGATGCATCATGTTCGTAGATGACGTGTCAAAGTTGGATCAGCTCAAGACAACGTTTGATTTCAATGATGTTCAAATAACTCATCTTACAGATCACCAGTTTATTATACCTGGATTTATTGATACCCACATCCATGCTCCACAATACTCGTACGTTGGAACTGGCTACGATCTCCCTCTGTTAAAGTGGCTAAATAAATACACCTTTCCTGTCGAATCCAAATTCCTGGACACTGAGTTCGCTAGAAGGATTTATCGTAAAGTTGTGACACGGACTTTAAACAGTGGCACCACTACCGCTAGTTACTTTGCCACCATTCATTACAATGCCACCACAGTCTTGGCTGATGTTGTAGAGGATCTTGGTCAAAGGGCTTATGTAGGGAAGGTCTGCATGGATACAAATTCACCAGAGTACTACATAGAAACCACTGAACAGTCTATTCAAGATACCGAGAAGTTCATCCAGTATGTCCAGGCCAAAAATAATCCTTTAATCACGCCTGTAATTACACCAAGATTCCTTGTCTCATGTACTGGCGAGTTGATGAAAAACCTGGCTGACTTAGCCAGAAAATACCAACTACCAGTACAGTCCCACTTGAATGAAAGCACCAATGAGATCAGCTTGGTCAGCAAGATGTTTCCCGACTGTGACAATAATACACAAGTGTTTAAAAAGTATGGCTTGCTGAGTGAGAAATCCTATATGGCACACTGCTGTCACATGTCGTCAGAGGAAGCTTGCATGCTTGCTCAAACTGGCACAGGTATCTCCCACTGCCCCGCATCGAATATCAACCTCAGGAGTGGTCATGCAGACGTGAGGTTCTTGGAAAATAACAACATCAAACTAGGCCTTGGTACAGATATAGCTGGGGGACACTCCTATTCCATGTTAAATGCCATCCAATCTGCCATCAGTGTTTCCAATGTGATTGCTATCAATACCGATGGCTACAAGCCCATCTCTCACCGAGAGGCTTTCTACATGGCCACACTTGGTGGCAGTAAAGTTCTTGGCCTTGACAAGAGGATTGGCAGCTTTGAAGTGGGCAAGGAGTTTGATGCAATCTTGGTTGATGCTGTGGCAGATGATTCACCGTTTGACTGCTATGATGATGATGATATGGAAGACATTGTTCAGAAGTTCTTGTACTGTGGAGATGACAGGAATATCAAGAGGGTTTTTGTGTCAGGCAAATTTGTTGCTGGAAGAGATCACAAGAATAAGAATAAGAATATAATCAGTAAGCATTAAGTGCAGGATTGTCCTCTCAGCACGAACAAGCATTGGCACAAGGACTTATCAGACGCGTGTTATTTATAATCGAGTTGGAAAATGTGGCAGTCGTTACATTCTTGAGCTGTTGTACAGACTAGCAGAAAGAAATGGTTTTAAAGTAATAGATTCCATTCAGGAAGGGACACTGGACTCTCATAAACGAAAATTCTCCGCTAACGAGCAGAGGAAGTTTGTCAAGTATATAACTCAAGAACCCGAGCCACCATTTGTATTTCATGGACATTTCCATTATATTGACTTTACTAGGTTCAGCGCCGCTAATCCTGTATATATCAACCTTATAAGAGATCCTGTACAACGCTTTATGTCAGCGTATTATTTCCGTCGTTTCGGTGATGATAGAAACAGAACGTGGAGTTTTCAAGGCACCGTAAAGGAAAAGAATATGACATTAGACGAGTGCGTTCTAAAGAGTCATCCAGAGTGTACGAATCCCAACAAAGTTCTCTACATTCTTTCTTATTTCTGTGGCCAACCAAGGGGTTGCAGGGGTTCCAGTATCAAGTCTTTAAGAAGAGCCATTTTAAATGTACAACATAAGTATCTTGTGGTTGGAATTCTTGAAGATGTTCACAGTTTTATCAAAGTTTTAGAAAAACTTCTTCCTCACTTGTTCAAAGGAGCTTATGAATTAAGAACAAAAACTGTTTCAGAAAGCAAGAAATCAACCAAGACACGAAACAAGAGGGTCCTTTCACCGAAAGCTACAAAAATCTTGAAGCACAGACTTCGTCTGGAGTACAGGTTTTACAACTTCGTGAAGGTGACATTTGACAAACTGAAGAAAACCCTCGAGATATAAACAAGGGATATGTGATAATATAATAATAATTATGAATATATTTTAATTATTTCTAAATCATTAGTATTTAAAAAAATTACAGACACACAATTTTAGCAGTGCGCACTCGCGTGACTACATCAATGGCCGTTTTTATACTACAGACGCATAATGCGTCCGGACGAAGTTGGGCAAAGTTTTTTAGTGCGTCCTTTTATGCGTCTTTAAGTTCGTCTCGTATAAAGACGGACAGAAGACGCATTAGGCGTCCAGACGCACAAGTTGATTTAGTGCGTCTTGAACGACGAACAATGTTGACGACGAGCACTTTTGCTTGTTCTCGGCAGGCATCAGACCGTTAAGTTAAGTTCGTCTTATATTTTGCCCGTCTTTATACTAGACGCAGAAAGTAATGGACGCATTATGTGTCTCGACGCATTATGCGTCTTTAGTATAAAAACGGCCAATGCTACAGTGGAACCTCGATATAACGAAGTGCCAGGGACTGTAAAAATCGGTTCGTTATAACGGGGTTTTCGTTATATCGGAGTTCGTTATATCGGGGTTTGTTATATCGGGGTTCGTTATATCGGGGTTCGTTATATCGGGGTTCGTTATATCGGGGTTCGTTATATTGGGGTTCGTTATATCGTGGTTCGTTATATCGGGGTTCGTTATATCGGGGTTCGTTATATCGGTATTCGTTATATCGGGGTTCGTTATATCGGGGTTCGTTATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R111	Guanine deaminase OS=Mus musculus OX=10090 GN=Gda PE=1 SV=1
Q86AW9	Guanine deaminase OS=Dictyostelium discoideum OX=44689 GN=guaD PE=1 SV=1
Q9WTT6	Guanine deaminase OS=Rattus norvegicus OX=10116 GN=Gda PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004621 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01979 all species →	Amidohydro_1	Amidohydrolase family	Domain	Interproscan
PF03567 all species →	Sulfotransfer_2	Sulfotransferase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006680 all species →	Domain	Amidohydrolase-related	Interproscan
IPR014311 all species →	Family	Guanine deaminase	Interproscan
IPR005331 all species →	Family	Sulfotransferase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR011059 all species →	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan
IPR051607 all species →	Family	Metallo-dependent Hydrolases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11271 all species →	GUANINE DEAMINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0006147 all species →	Biological Process	guanine catabolic process	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0008892 all species →	Molecular Function	guanine deaminase activity	Interproscan
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016810 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0019239 all species →	Molecular Function	deaminase activity	Interproscan
GO:0046098 all species →	Biological Process	guanine metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene29904.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.