Gene detail

Detailed information of gfas1.m1.11253.m1 in Galaxea fascicularis

Genomic Location: Sc0001453:3629...31859
NR annotation: CAH3047017.1, unnamed protein product [Porites lobata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.11253.m1

ATGGTTCAAATGAAAGTGACCAAGTGCCCGTCTGACCAACTATCCTTGACGAACTGTCTTGTTGTGAACGAAAATGATTTTAGTCCAGAGAGAGTGAAACATGTTGAGGTCCGAACCAGTGCTCCTCAAGGTTATGTTTTTACAATCAGAATCGCTGACAACATGCCTCAAGGGTCTGTTGGATTCAGCCTTGTTCAGAGAAAGTGGGCTGGTGTTCAACTCAATGGTTATGTAGATGTTGTACCTCATAGATTTGGAGAAGGGTCATTTCTGTCAAATATTACAGTGGAAGCAGACTTTCTTCAAAAAGCAAGGGGAAACAGTGATACTTATGACACAAACAAAATGGCAGAGGAGTTTACACACCAATTTTTGGATCAAGCTTTCTCTGTAGGACAACAGGCTGTGTTTTCTTTCCAAGACAAGAAATACCTCATTTTTGGGGTCAAGAGTATGGAAGTGATTGATGTTAGTCTCCTTGGTGGGGCAAATGCAAAGGCTTCTCAAGGAACAAATGTTTCGATGGGTTTAGTAACAAGAAACACCCAAGTTCTGTTTGAAAGAGCTGAGGGATCGGTGTTAAATCTGACAGGCACTGCTAAAGGAAAAGCAGCTACGCAGTCCATTATTAGCCGAGACTGGGACTTTACAAAGCTGGGTATTGGAGGACTTGACAAGGAATTCTCCAACATCATTCGGAGAGCATTTGCTACGCGCCTTTTTCCACCCGAAGTTGTTGACAAGCTTGGACTGAGGCATGTCAAGGGAATTTTGTTACATGGGCCGCCAGAGGTTCTCAACAAGTATGTTGGAGAGTCGGAAGCGAACATCAGAAAGTTGTTTGCTGAAGCAGAAGAAGAGCAGAAAAAGTTTGGAGATAGCAGTGGGCTTCACTTGATTATCTTTGATGAATTCGACGCTGTTTGTAAATCAAGATACATGTACAATATTGATGGCGTGGAGCAACTCAATAACGTGCTTCTCATCGGTATGACAAACAGGAGAGATCTGATTGACGATGCTTTGCTCCGACCTGGACGACTTGAGGTGCAAGTAGAAATAGGTCTCCCGGACGAGGCTGGCAGAGTACAGATTCTGGAGATTCACACAGCTAAGATGAGGGAACACAAGCTGCTCGCTCCGGATGTAGACCTGGCTGATTTAGCTCTCAAAAACAATTTTGAGATTGACCCTGAGGCCGCAGAAAAGATAGTTGTAAAGCATGAGGACTTTTACCATGCACTGGAACACGACATTAAACCAGCATTTGGACCTTCAGATGACAATCTTGATCTTTATGTTGCCAATGGAATTGTTCGCTGGGGCAACCAAGTGCAGCGTATTTTAGATGATGGCAGATTGCTGTTACAACAAACCAGAACTCAAGACATCACCTCGCCAATCACAGTCTTACTTGAAGGTCCTGTCGGTTGTGGTAAAACAGCTCTGGCGGTACAGATGGCCCTGAGTTCAGACTTTCCCTTCATCAAGATGTGCTCGCCAGAACACATGATTGGATTCGTGGAAAGCGCAAAATGCCAAACGATTAAAAAGATATTTGACGATGCAGACAAGTCAGAGCTCAGTTGTATCATTGTCGATGACATAGAACGACTGCTGGATTATGTCGCCATTGGCCCAAGATTTTCCAACACGGTCTTGCAAGCCTTGCTTGTTTTGCTTAAGAAGAAACTAAGAAAGGGTCGTAAGTTGATCGTCGTTGGCACAACAAGCTGCCGGGATGTGTTGGAAACCATGGGAATTGTTGAAGCGTTCAATACAGTAATCCACGTGTCTTGTTTGTCCTCTGTTGATCATCTAAAGGAGGTGCTACAGGAAGTGAAGTTGTTTGATGCTGATGAGATCAAAGAAATCGAGAGAAACATTGGCCAGCGAAGGTTGTTTGTTGGTATAAAGAAACTTCTCATGATGGCTGAGATGGCTGTTCAGACGAACAAGCGTGATCGAGTTGACAAGTTCTTAACGCTCCTGGAAGAAGAAAACTGGTAA

Transcript

gfas1.m1.11253.m1

CGAGAACAAAGATGGCGACCGGCGAAAAACTGTAAACTAAGCTTATCTTCATAGTATTCCACAAAATAGTTGAACATGGTTCAAATGAAAGTGACCAAGTGCCCGTCTGACCAACTATCCTTGACGAACTGTCTTGTTGTGAACGAAAATGATTTTAGTCCAGAGAGAGTGAAACATGTTGAGGTCCGAACCAGTGCTCCTCAAGGTTATGTTTTTACAATCAGAATCGCTGACAACATGCCTCAAGGGTCTGTTGGATTCAGCCTTGTTCAGAGAAAGTGGGCTGGTGTTCAACTCAATGGTTATGTAGATGTTGTACCTCATAGATTTGGAGAAGGGTCATTTCTGTCAAATATTACAGTGGAAGCAGACTTTCTTCAAAAAGCAAGGGGAAACAGTGATACTTATGACACAAACAAAATGGCAGAGGAGTTTACACACCAATTTTTGGATCAAGCTTTCTCTGTAGGACAACAGGCTGTGTTTTCTTTCCAAGACAAGAAATACCTCATTTTTGGGGTCAAGAGTATGGAAGTGATTGATGTTAGTCTCCTTGGTGGGGCAAATGCAAAGGCTTCTCAAGGAACAAATGTTTCGATGGGTTTAGTAACAAGAAACACCCAAGTTCTGTTTGAAAGAGCTGAGGGATCGGTGTTAAATCTGACAGGCACTGCTAAAGGAAAAGCAGCTACGCAGTCCATTATTAGCCGAGACTGGGACTTTACAAAGCTGGGTATTGGAGGACTTGACAAGGAATTCTCCAACATCATTCGGAGAGCATTTGCTACGCGCCTTTTTCCACCCGAAGTTGTTGACAAGCTTGGACTGAGGCATGTCAAGGGAATTTTGTTACATGGGCCGCCAGAGGTTCTCAACAAGTATGTTGGAGAGTCGGAAGCGAACATCAGAAAGTTGTTTGCTGAAGCAGAAGAAGAGCAGAAAAAGTTTGGAGATAGCAGTGGGCTTCACTTGATTATCTTTGATGAATTCGACGCTGTTTGTAAATCAAGATACATGTACAATATTGATGGCGTGGAGCAACTCAATAACGTGCTTCTCATCGGTATGACAAACAGGAGAGATCTGATTGACGATGCTTTGCTCCGACCTGGACGACTTGAGGTGCAAGTAGAAATAGGTCTCCCGGACGAGGCTGGCAGAGTACAGATTCTGGAGATTCACACAGCTAAGATGAGGGAACACAAGCTGCTCGCTCCGGATGTAGACCTGGCTGATTTAGCTCTCAAAAACAATTTTGAGATTGACCCTGAGGCCGCAGAAAAGATAGTTGTAAAGCATGAGGACTTTTACCATGCACTGGAACACGACATTAAACCAGCATTTGGACCTTCAGATGACAATCTTGATCTTTATGTTGCCAATGGAATTGTTCGCTGGGGCAACCAAGTGCAGCGTATTTTAGATGATGGCAGATTGCTGTTACAACAAACCAGAACTCAAGACATCACCTCGCCAATCACAGTCTTACTTGAAGGTCCTGTCGGTTGTGGTAAAACAGCTCTGGCGGTACAGATGGCCCTGAGTTCAGACTTTCCCTTCATCAAGATGTGCTCGCCAGAACACATGATTGGATTCGTGGAAAGCGCAAAATGCCAAACGATTAAAAAGATATTTGACGATGCAGACAAGTCAGAGCTCAGTTGTATCATTGTCGATGACATAGAACGACTGCTGGATTATGTCGCCATTGGCCCAAGATTTTCCAACACGGTCTTGCAAGCCTTGCTTGTTTTGCTTAAGAAGAAACTAAGAAAGGGTCGTAAGTTGATCGTCGTTGGCACAACAAGCTGCCGGGATGTGTTGGAAACCATGGGAATTGTTGAAGCGTTCAATACAGTAATCCACGTGTCTTGTTTGTCCTCTGTTGATCATCTAAAGGAGGTGCTACAGGAAGTGAAGTTGTTTGATGCTGATGAGATCAAAGAAATCGAGAGAAACATTGGCCAGCGAAGGTTGTTTGTTGGTATAAAGAAACTTCTCATGATGGCTGAGATGGCTGTTCAGACGAACAAGCGTGATCGAGTTGACAAGTTCTTAACGCTCCTGGAAGAAGAAAACTGGTAAGAGCGATTTCCTTTAAGGATCTGACCACTTAAAGTTTTGTGCTCCTTGACGTTACACTTGTCAAAGTTTAGAGTTTTGGTTTTTAATTGAGCATCAAAATTAAATTGTGTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P18708	Vesicle-fusing ATPase OS=Cricetulus griseus OX=10029 GN=NSF PE=1 SV=1
P46460	Vesicle-fusing ATPase OS=Mus musculus OX=10090 GN=Nsf PE=1 SV=2
Q5R410	Vesicle-fusing ATPase OS=Pongo abelii OX=9601 GN=NSF PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003169 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF02933 all species →	CDC48_2	Cell division protein 48 (CDC48), domain 2	Domain	Interproscan
PF02359 all species →	CDC48_N	Cell division protein 48 (CDC48), N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR003338 all species →	Domain	CDC48, N-terminal subdomain	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR039812 all species →	Family	Vesicle-fusing ATPase	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR029067 all species →	Homologous_superfamily	CDC48 domain 2-like superfamily	Interproscan
IPR004201 all species →	Domain	CDC48, domain 2	Interproscan
IPR009010 all species →	Homologous_superfamily	Aspartate decarboxylase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23078 all species →	VESICULAR-FUSION PROTEIN NSF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005795 all species →	Cellular Component	Golgi stack	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0035494 all species →	Biological Process	SNARE complex disassembly	Interproscan
GO:0043001 all species →	Biological Process	Golgi to plasma membrane protein transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.11253.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.