Gene detail

Detailed information of gfas1.m1.11482.m1 in Galaxea fascicularis

Genomic Location: Sc0001572:3267...18276
NR annotation: CAH3176881.1, unnamed protein product [Porites lobata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.11482.m1

ATGAACATGGTGTGTCTCCACTTTACAGGCGAGATAGAGGAGATTATTTTTGAAGTTATGTTGTTGAAAAAACCAGGAGTACGTGAGTTTCGTAAAGATGCGGCGTTCATTAATGGTCTTCAGTCGCATGAAGTGTTGCTTCAAAGACACATTCCACTTCACAAAGCCAAGACATGTCGGGCAGAGAGGAAAGGCGATAACACATTTGAAGTACATTTTGAGAACTTTGCTCCAGGAAGTGTGGTTGCATTTGACATTACAATGGAAAGCAGAGTCAAGGATGCTTTAGGTCAATTAAGACAACTAGCGGTGGATTTGTATGAGAAGAGGTCTGGAAATCAAGAGAGTTACAGCAAGATCGATGAATTGGATTCAATTATTAGCAATCTTTCACTCTGCGATCTTAACCGAGTGCTGTACAGAGAAGATCCTGAGGAGCGAGATGATGGTAATGGAGGGGGAGTCTATGTCCTGCCTGACACCGGAGCACTGGTATATTGTGGATTACAAGGTGTGATATCAGTGCTGACCAATGTTCGCCAGTTTGATGACCTGGGACACCCTCTGTGCAGAAATCTGCGAGATGGAGATTGGATGATGGACTACACTGTGACAAGACTACTGCCGTTTGTTGGTACAAGACAGCTTGGGGTGTGGCTGGACAAAGCATTTAGGTTGGTCAAAGGATTACCACGCTATTTGGTGCCCTGTTACTTCGATGCCATCGTAACTCCACTTTATCTCAAGTTGTTGGAGCACTCTTGGGCGCATATGTCAAGTTTTGTAAAGAATGGTTCGTCTTTCCTCAAAGCCCTTTCACTTGGCTCGCTCCAGTTTGTTGGTTTGTCTAGTTCAGCTTCTCTCCCGGTTCTGTCGCCAAAACTTTATCACGGACCATCATCAGGGGCTGCTATGCCAACACTGATGTCAATGGCGGCAGGGTTACCTCATTTCTCTACTGGCTTCATGCGATGTTGGGGACGAGATACGTTCATAGCTCTCAGAGGCTTGCTCCTGGTAACTGGCAGATACCAGGATGCCAGGCATCATATTTTAGCTTACGCAGCTTGCGTTCGCCATGGTCTGGTGCCAAACTTGTTGGACGGTGGACGTAAACCTCGCTATAACTGTAGGGACGCATCCTGGTGGTGGCTGCAGTGTATTCAGGATTATTGCTGTATTGTGCCGGATGGACTCAAGATTCTCTCTGATCCAGTGTCCCGGATATTCCCCTCAGACTGTTGCCAACCACAGCCGCCAGGCAAACATGATCAGCCGCTATATGACGTAATCCAGGAGGTACTACAGCGTCACTTAATCGGCATTAGTTTCCGTGAACGAGGGGCTGGGCCCGATCTAGACAGTCACATGACTGGTGCAGGATTTAATGTCACTGCTGGTGTCCGTGAAAACACTGGGTTCGTGTTTGGCGGTAACAAGTGGAATGCTGGGACCTGGATGGATAAAGTTGGTGAATCACACAAGGCGGGTAACTTTGGAGTTCCCGCTACACCAAGGGACGGGTGCGCTGTAGAAATCGTTGGTCTATGCAAATCAACTGTGCGTTGGTTGGCAGAGTTGTGTGATCAGAAGAAGTTTCCTTATGCTGGTGTCTCTAAGCTTCAAGATGGTTACCCAGTGGAGTTATCTTACAAAGAATGGGCTTTTAGGATCGACAAAGCATTTGAAAAGCACTTCTGGATCCCTGAAGAACATGAAGAGCACGATGAGGAGGCGAAGCTTATCCACAGACGAGGCATTTACAAAGACACCTTTGGTGCAAGTGACAGATTTGCTGATTACCAGCTCAGACCCAACTTCGACTGGGCTTACGAAGGAGTCTACGATAACTCACAAGACTCCAATTCATACAAGAGTGCCAAGGGATTTGGTTATCATCAAGGACCGGAATGGTTGTGGTGCGTAGGCCCCTTTCTGAGAGCTCGGCTGTACTTTGCAAAGAAGCTTCACGGAAAAGAGGGACTGAAGAAGACAGTAGTGCGTGTGAAAAGCATTCTAGCAAAACACAAGATGGAGGTAACTTCCTCCCCCTGGCGCAGCTTACCGGAGCTCACTAATGCCAATGGGGCACCGTGCTATGATGGCTGTCCAGCACAAGCCTGGTCTGTTGGTTGCTTAATAGATGTAATGTACGATATGGAAAAGTTGGTTAAAGATGATTAA

Transcript

gfas1.m1.11482.m1

GCAGACTGGTTTATAAGTATGAACATGGTGTGTCTCCACTTTACAGGCGAGATAGAGGAGATTATTTTTGAAGTTATGTTGTTGAAAAAACCAGGAGTACGTGAGTTTCGTAAAGATGCGGCGTTCATTAATGGTCTTCAGTCGCATGAAGTGTTGCTTCAAAGACACATTCCACTTCACAAAGCCAAGACATGTCGGGCAGAGAGGAAAGGCGATAACACATTTGAAGTACATTTTGAGAACTTTGCTCCAGGAAGTGTGGTTGCATTTGACATTACAATGGAAAGCAGAGTCAAGGATGCTTTAGGTCAATTAAGACAACTAGCGGTGGATTTGTATGAGAAGAGGTCTGGAAATCAAGAGAGTTACAGCAAGATCGATGAATTGGATTCAATTATTAGCAATCTTTCACTCTGCGATCTTAACCGAGTGCTGTACAGAGAAGATCCTGAGGAGCGAGATGATGGTAATGGAGGGGGAGTCTATGTCCTGCCTGACACCGGAGCACTGGTATATTGTGGATTACAAGGTGTGATATCAGTGCTGACCAATGTTCGCCAGTTTGATGACCTGGGACACCCTCTGTGCAGAAATCTGCGAGATGGAGATTGGATGATGGACTACACTGTGACAAGACTACTGCCGTTTGTTGGTACAAGACAGCTTGGGGTGTGGCTGGACAAAGCATTTAGGTTGGTCAAAGGATTACCACGCTATTTGGTGCCCTGTTACTTCGATGCCATCGTAACTCCACTTTATCTCAAGTTGTTGGAGCACTCTTGGGCGCATATGTCAAGTTTTGTAAAGAATGGTTCGTCTTTCCTCAAAGCCCTTTCACTTGGCTCGCTCCAGTTTGTTGGTTTGTCTAGTTCAGCTTCTCTCCCGGTTCTGTCGCCAAAACTTTATCACGGACCATCATCAGGGGCTGCTATGCCAACACTGATGTCAATGGCGGCAGGGTTACCTCATTTCTCTACTGGCTTCATGCGATGTTGGGGACGAGATACGTTCATAGCTCTCAGAGGCTTGCTCCTGGTAACTGGCAGATACCAGGATGCCAGGCATCATATTTTAGCTTACGCAGCTTGCGTTCGCCATGGTCTGGTGCCAAACTTGTTGGACGGTGGACGTAAACCTCGCTATAACTGTAGGGACGCATCCTGGTGGTGGCTGCAGTGTATTCAGGATTATTGCTGTATTGTGCCGGATGGACTCAAGATTCTCTCTGATCCAGTGTCCCGGATATTCCCCTCAGACTGTTGCCAACCACAGCCGCCAGGCAAACATGATCAGCCGCTATATGACGTAATCCAGGAGGTACTACAGCGTCACTTAATCGGCATTAGTTTCCGTGAACGAGGGGCTGGGCCCGATCTAGACAGTCACATGACTGGTGCAGGATTTAATGTCACTGCTGGTGTCCGTGAAAACACTGGGTTCGTGTTTGGCGGTAACAAGTGGAATGCTGGGACCTGGATGGATAAAGTTGGTGAATCACACAAGGCGGGTAACTTTGGAGTTCCCGCTACACCAAGGGACGGGTGCGCTGTAGAAATCGTTGGTCTATGCAAATCAACTGTGCGTTGGTTGGCAGAGTTGTGTGATCAGAAGAAGTTTCCTTATGCTGGTGTCTCTAAGCTTCAAGATGGTTACCCAGTGGAGTTATCTTACAAAGAATGGGCTTTTAGGATCGACAAAGCATTTGAAAAGCACTTCTGGATCCCTGAAGAACATGAAGAGCACGATGAGGAGGCGAAGCTTATCCACAGACGAGGCATTTACAAAGACACCTTTGGTGCAAGTGACAGATTTGCTGATTACCAGCTCAGACCCAACTTCGACTGGGCTTACGAAGGAGTCTACGATAACTCACAAGACTCCAATTCATACAAGAGTGCCAAGGGATTTGGTTATCATCAAGGACCGGAATGGTTGTGGTGCGTAGGCCCCTTTCTGAGAGCTCGGCTGTACTTTGCAAAGAAGCTTCACGGAAAAGAGGGACTGAAGAAGACAGTAGTGCGTGTGAAAAGCATTCTAGCAAAACACAAGATGGAGGTAACTTCCTCCCCCTGGCGCAGCTTACCGGAGCTCACTAATGCCAATGGGGCACCGTGCTATGATGGCTGTCCAGCACAAGCCTGGTCTGTTGGTTGCTTAATAGATGTAATGTACGATATGGAAAAGTTGGTTAAAGATGATTAACAATAATAATCGTAAATGTATGGCGCGTATTTTTAAACGTAGATGGTAAGGAGAGAACGTTTCTTAGCAGGGAGAATTGTGTAAACCTGCGAACAACTATCTGCCAGGAGTGTTGTGTTTGGTGGTTGAAGGCGTGGCTAGGCACCCCATGTCGTGTACAAATAACACCTTGAGAAGTTACCTAGGTTTCAAAGGAATCGAGCAAAACCGGCATGCATTTGACACAAGTCGTTTTCGTATTTCTTTATTTTGGTATCACCGATTTTGTTAAACTTCGGACTGGCAATTTGCATTTCTGAACTTGTGGTACTTAAAAAGCGTTCATACTGATCAGCCTGGGATCCCACATTTTTGTCCTATTTTATGAGTCGGCACTCACAAGAACTGTTGTGTGGTTATGCCCTCAACCACTGTATTTCGTGTATTAAATGCACGCATTAACAATATGTTTTAGTTAAGAAGTTAACTATTCTGAAGCGAGAGTAGTGTATAAGGTCGGGCTGTGGTATTTAACTTGAGGTTGTAACACAAGTAATGAATTCAACAAGGTATTTTGTTATGTTGCATTACTATGTATGCGTATTAGGCTTTGATAACGATGAAAATCTCAAAAATTGATACACTAGGTTAGAAGGCGGACTAAACGTCAAGCTGTTCATTCTGAAGAAACTACAAAGCCGGGAAGAGGAAGACATGTTGGTTTTGGTTACCAACTCCCCCCCCCCCCCCCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35574	Glycogen debranching enzyme OS=Oryctolagus cuniculus OX=9986 GN=AGL PE=1 SV=1
P35573	Glycogen debranching enzyme OS=Homo sapiens OX=9606 GN=AGL PE=1 SV=3
Q2PQH8	Glycogen debranching enzyme OS=Canis lupus familiaris OX=9615 GN=AGL PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003738 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06202 all species →	GDE_C	Amylo-alpha-1,6-glucosidase	Repeat	Interproscan
PF14702 all species →	hGDE_central	Central domain of human glycogen debranching enzyme	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR032790 all species →	Domain	Glycogen debranching enzyme, C-terminal	Interproscan
IPR008928 all species →	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR032788 all species →	Domain	Glycogen debranching enzyme, central domain	Interproscan
IPR010401 all species →	Family	Glycogen debranching enzyme	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10569 all species →	GLYCOGEN DEBRANCHING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004134 all species →	Molecular Function	4-alpha-glucanotransferase activity	Interproscan
GO:0004135 all species →	Molecular Function	amylo-alpha-1,6-glucosidase activity	Interproscan
GO:0005980 all species →	Biological Process	glycogen catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.11482.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.