Gene detail

Detailed information of gfas1.m1.12436.m1 in Galaxea fascicularis

Genomic Location: Sc0002169:126...13690
NR annotation: CAH3158408.1, unnamed protein product [Pocillopora meandrina]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.12436.m1

GCTAAACCAGATCAGGGGGAAGACACCAGAGGAACTGGGACAAGTTCAGCTGATCAGCAATTCCATCGAACTCCACTACAAAAAGCTGAACGTAACAATCATGAATCCATTGTACAGCTGCTTCTGGAGAACAATGCAAGTCCAAGTTTTCGGCAACCATATAAAAACATAAATAGAGTTCCAAGTGTTAATGTTGATGTTTTGCCTTTTCATGACAAGGGAAACAATACGAGCTGGATGAGCAGAGGTGAAAAGGCCAAAGCGTCCAGAAGTGCTTTGCACAGAGCCTCCATCAATGGACAGTACGAGGCTGTCAAAATTCTTGTGGAAAGCGGTGCAGATGTGGACAAAAGAGATGAGTTTCATCTGACACCTCTTCACCTTGCTTGTTGGTATGGGCAGGAATCTGTTGCCAGACTGTTGTTAGAACATGGTGCAGACGCCAACGCGTTAGACAGGTTTCATCGAACACCACTACAAAAAGCTGAACGTAACAATCATGAATCCATTGTACAGTTGCTTCTGGAGAACAATGCAAGTCCAAGTTTTCGGCAACCACTCACTCTGAAGACGCTAGCACGCAAGGCTTTTTTGCGTGTCGATGGACTGTCTGGTTTTAACATGCTCCAAGCGGCTGTCTTAGAAGGAGACTATGATACTATGGTTGAGATTGAGCAATCACTGAATGAGTTACACCACAGAGCAAAGACCGACGATGTGGAACAGGTAATAGAAGTCGTTATGTCAAATGATGGTGTAGATATAAATTTCCCCGCAAAAAATGATCTGACGCCTTTGATGTGTGCAAGTCAGTCATCCTCTGGTAAATTGGTCAAGTGTCTCATCGATCTTGGTGCGGACATCAATGCTCAAAGAGCCGACAACAGAAGAGCACCTCTGTTGTTAGCAACTGGTTGGAATCACTACATGGCCACTCACCTGCTATTAGAGCAAGGCGCTGATGCGAATGTTCAGTCTTTTCATGAAAACAAAGGAAATACAGCTCTTCACAACACTGCTTCGGAAGGATTTTTCAACATTTCACTGTTACTAATTGAATCGCGATGCAACGTAAACCAACAGAACGTGGATGGGGAAACCCCACTTCATATTGCGGTCCCTAATGAAGATGAACCTCCTCTCAAGCTCTTGCTCGAAAACAAGGCGGATGTGAATATTCCAGACCATTGGGGCAATACACCACTACACATAGCTGCTCGTGGAGGATTTTTGAACATTTCTCGGCTACTAATTGCCTCGGGATGCAACATCAACCAGAAAAACTCCGAGGGAGTAGCTCCACTTCATATCTCAGTTGGGAATGAAAGTGAACCTCTTGTCAAACTTTTTCTCGAAAACAAGGTGGATGTGAATATTCCAGACCATTGCGGCAATACACCACTTCACAGAGCTGCTCGAGGAGGATTATTAGACATGTCTCGGCTACTAATTGTATCAGGATGCAACATCAACCGGAAAAACTCCAAGGGAGAAGCTCCACTTCATATTTCAGTCCTGAGTAAAAGTGAACCTCTTCTCAAGCTCTTGCTCGAAAACAAGGCGGATGTGAATATTCCAGACCATTGGGGCAATACACCACTTCACATAGTTGCTCGTGGAGGATTTTTGAACATTTTTCGGCTAATAATTGCCTCAGGATGCAACATCAACCAGAAAAACCGCAAGGGAGAAACCCCACTTCATATTGCAGTCCTGACTGATGAAAGTGAACTTCTTCTCAAACTTTTGCTCGAAAAGAAGGTGGATGTGAATATTCCAGACCAACGGGGCAATACACCACTTCACATAGCTGCTCATGAAGGATTTGTGAAGGTGTCACAGTTACTAATAGAAACAGGATGCAACATCAATCAGAAGAACGCCGATGAGGAAACCCCGCTCCACCTTGCAGTCAACGCTTACGAGAAAACCCCACCCTATTTTGGAGTTGAGACAGATATTGAACCTGTCGTAAAGCTCTTGCTTCATAACAAGGCCGATGTGAATATTAAAGACGGTAGAGGAAATACAGCACTTCACAGAGCAGCTCATCGAGGATTTTTGAAGATATCACAGTTACTAATTGAAGCAGGGTGCAACATCAATGAGAAGAACGCCGATGAGGAAACCCCGCTCCTTCTTGCAGTTAACGCTTACGAGAAAACCCCACTCTATTTTGGAGTTCAGACAGATATTGAACCTTTCGTAAAGCTCTTGCTTGATAACAAGGCCGATGTGAATATTAAAGATGGTAGAGGAAATACAGCACTTCACAGAGCGGCTCGTGGAGGATGTTTGAAGGTGTCACAGTTACTAATTGAAGCAGGATGCAACATCAATGAGAAGAACACCGATGAGGAAACCCCGCTCCTTCTTGCAGTCAACGCTTACGAGGAAACGCTACCTGTCGTAAAGCTCTTGCTTGATAACAAGGCTGATGTGAATATTAAAGAGGGTAGAGGAAATACAGCACTTCACAGAGCGGCTCGTGGAGGATTTGTGAAGGTGTCACAGTTACTAATTGAAGCAGGATGCAACATCAATCAGAAGAACGCCGATGAAGAAACCCCGCTCCACCTTGCAGTCAACCATCACAAGGACACCCCACGCTATTCTAGAGTCAAGACAAACAGTGAACTTCTCGTAAAGCTCTTGCTTGATAACAAGGCTGATGTGAATGTTAAAGACGGTAGAGGAAATACAGCACTTCACAGAGCGGTTCGTGGAGGATTTTTGAAGATATCACAGTTACTAATTGAAGCAGGATGCAACATCAATCAGAAGAACGCCGATGAGGAAACCCCGCTCCACCTTGCAGTCAACGCTTACGAGGACACCCCACGCTATTCTGGAGTCAGGACAAGTAGTGAACCTGTCGTAAAGCTCTTGCTTGATAACAAGGCTGATGTCAATATTAGAGACGGTAGAGGAAATACAGCACTTCACAGAGCGGTTCGTGGAGGATTTTTGAAGATATCACAGCTACTAATTGAAGCGGGATGCAACATAAATGAGAAGAACGCCGATGAGGAAAACCCACTCCTTCTTGGAGCCAATGCTTACAAGGAAACCCGACGCTATTCTAGAGTCAAGACAAGTAGTGAACTTGTCGTAAAGCTATTGCTTGATAACAAGGCTGATGTGAATATTAGAGACGGTAGAGGAAATACAGCACTTCACAGAGCGGCTCGTGGAGGATTTGTGAAGGTGTCACAGTTACTAATTGAAGCAGGATGCAACATCAATGAGAAGAACGCCGATGAGGAAACCCCGCTCCTTCTTGCAGTCAACGCTTACAAGGACACCCCACGCTATTCTGGAGTCAGGACAAGTAGTGAACCTGTCGTAAAGCTCTTGCTTGATAACAAGGCTGATGTGAATATTAAAGACGGTAGAGGAAATACAGCACTTCACAGAGCGGCTCGTGGAGGATTTTTGAAGATATCACAGTTACTAATTGAAGCAGGATGCAACATCAATGAGAAGAACGCCGATGAGGAAACCCCGCTCCTTCTTGGAGCCAATGCTTACGAGGAAACCCCAGCTAGTCTAGAGACAAGACAAGAAGTGAACTTGTCG

Transcript

gfas1.m1.12436.m1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5UPG0	Putative ankyrin repeat protein L86 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_L86 PE=4 SV=1
Q9XZC0	Alpha-latrocrustotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus OX=6925 PE=1 SV=2
Q9C6C3	ADP-ribosylation factor GTPase-activating protein AGD2 OS=Arabidopsis thaliana OX=3702 GN=AGD2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000025 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24198 all species →	ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15502	ANKRD28; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.