Gene detail

Detailed information of gfas1.m1.12482.m1 in Galaxea fascicularis

Genomic Location: Sc0002220:3412...15189
NR annotation: XP_044184844.1, helicase with zinc finger domain 2-like [Acropora millepora]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.12482.m1

ATGAGCCCAGATGTGTTTTCACCTCAAGCAAAAAAGTGGGGATTCCAGATTTCTTTACAAGAGAGACTCTTTTATGAGTACAAGAGACGCCAAAGCAGTTCGGAAATAGATCCTAACCTCATCTTCCTAACAGAGAATTACCGCTCAAATGAACGGCTGCTCCAGTTCTCGTCCGACATGTTTTACGGAGGCGACCTTTCCTCTGGCAGCGAACAGCCTCTTCACCCTCAGTTCGGACCGCTCGTGTTTTATGCCGCTCTTGGCAAAGAGGAGATAGAAGAGAACCATGCATCGTATCGCAACATAGCAGAGGTAAATGAAGTTGTAAAGCGAGTAAAAGAGCTTTCTGATTGCTGGCCTGAGGAATGGGGTACGAAGGATCTTCAACAAATAGCAGTGGTCTCTTCCTATCGCTATCAGTTCCGAGCGCTCTTCGTCAGCACAGTTCGAACGTTCCACACGTGCAAAGAACCCGTGGACTCGGGAACTGATGAAAGTGAGAGGCCTTACTTGTATTTTTTGTCAGATCCTAAACTGCTCAACACCGCCCTTACTCGTGCCCAGTCTCTTATCGCTGTGGTTGGCGATCCATTCTCTTTGAGAACCGTCGGTGATTGCCAAGGGTTATGGGAAGAGTTCATCAAGCGATGTAACGATGACGGAAAACTTTTTGGGATTCAACCAAACGAGCTCGAAGAAGGCATCTCACAATGTGGACTCAATGTCAACGCTGCTGAGTTTGTACCAAAGGTGACCGCGGACTCTAGTCAACAACTGACTGATCCTTCTGGCTCATATTCTTCCTTACCTCCACAGCAAGATAAGCTAAATGAGAAATCAAGAGAGAACTCATTTCTTGAAGGAACAATCGGTTTGGTTGACAAAGATGACTTTTCGGACACCAAAAGTGAAGCCGGAAGTGCATCTTACTCGGACGATGCAGGTGACGAATTTTCTGAGACTGACGACTTTGGTAATGATGATGATTTTGCTGAATATGAAAACGTGGATGAAACAGTCCCCCCAAGGTGCATGGATCCCATTATCCAGGCCTTAAAGGAAAAGTGTGAAGAGGTTAAAACCAAAAGAAAACTAAAAGAAGAAAAGAAGTTTGAAGAGATTGCAAGAAAAGTTGTCGTCAAAGATGAAGCAAAACCAACGAAAGTCAATTCAGACTTGCATCTCTCAAAAACAATAAACAAAGAAAATGTAGAAAGTGAACTTAATACCACTGGAAACAAAGTCGTTCACGAAGACTTCAAAATGAAGACGAAGAAAGGTAAAACTCAGATTTTCCTGGTAAACCTGAATTACAAGTACAGCGAACGTACAGAACGGCTTTGTCACCAGCCAAAAGTCCAAGACCAAGAATGCCTACAACCGGAGTATCTTGATCGTTTGTTAAGAAACGATCCTAAGCTCTACCGCGAATGTACTTTAAGAGTTAACTACGAAGGAACAAGAACATCGTATGGTGAATTACAAGATCCTGAAAGTGAAGATATTTTGATTGAAGGAAACACTCGCCAGAGCTTTGATCGTGACGTGGTGGTTGTTAAACTGTCGGAGAAACCTTCGCTGGAAGTTGAAGATTCTTCGGAGATATTAAAAGGGCAGATCATGGGTATTCGGCATCATGCAATTAATTTCCGCGAACGGCAGTTTGTGTGTAGAGTCTCCAGGGATAACTCTCGGGTAATGTATCCCATCAACAAATCAATGACACCGATTGTTAACCTCAGTGACGAACGATGTAAGGGAGTACCTATTTACAGAATGATTCAAGCGGAATCCTCCAAAAATACGGTGCGCGTAGGTACCCTTTCGCTTAAGGATGCTCTGAGCGACAAATTTTTATTTGTTGTTCAGTACTTACAATGGAGGCGTGAATTTCCCTACCCGCTCGGCATTGTGACCAANATCAACAAATCAATGACACCGATTGTTAACCTCAGTGACGAACGATGTAAGGGAGTACCTATTTACAGAATGATTCAAGCGGAATCCTCCAAAAATACGGTGCGCGTAGGTACCCTTTCGCTTAAGGATGCTCTGAGCGACAAATTTTTATTTGTTGTTCAGTACTTACAATGGAAGCGTGAATTTCCCTACCCGCTCGGCATTGTGACCAAGACTGTTCGCAAAGGTAATAAACTCGACGACTCCTTCAAACTTCTCAATGCTGAATATAACGTTAATGAAGAATTCCCAGAGTTGGCTATCAAAGAGACAGAACGTAGCACAGCGCGTTGGTCAAGTACCGTTTCGAATGAAAGAAAGAGCCGACCATTAGTACAAAACGCATTTACAATTGATCCTCCAGGAAGTCGAGCTTTGGACGATGCGTTAACAGTTGAAGAATTACCAAATGGTCTTTACAAAGTCGGAATTCACATTGCTGATGTATCGTCCTATGTTCAAGCTGGGAGCAGAATCGATGCCGAGGCCAAGAGGAGAGGTACTTCATACTTTCGAGGACATGGACGTGGAGAGATCCTCATGCTTCCAGAGGCGCTGAGTTATGACATCTGTAGTCTGTTGCCGAATCAAGAGCGACTTGCAGTGTCTGTTTACGTGATGTTGGATCAAGAGGGTTGTATTCAAGAAGAAAATAAGCTTGATCTTTGTCGATCGATTGTAAAGTCGCAGTGTCGTTTGACGTATGCTCAAGCACAGAAAATCATAGTTCAAGAACCTCTCAGCTGCAAGTCTCAGGATGGAGAACTAACACCGGAAATCGAAGAAAGCATCGGCAGACTAAATTTTTTGGCACAGAAAAGAAGGAACTTCCGTCTCTTTGACGGAGCATACTTTCACTTCGATCACGCAGACCGACAAGAGGACCTAGAGGCTCATGAGCTGGTGGAGGAAATGATGATCTTGGCTAACTGTGTTGTGGCAAGGCACCTTGTGAAGAGAAAACCTGAGCTTTCACCATTGCGAATTCAACGTCGCCCCAAGAAACGCAAACTAACAGAGTGGAGAGAACGTTTTGGTAGAACTGCGAAGCTCTCCCTTTCTCTCAGGAGGCATTTGACTAGTCCTGAAGATGTTGTATGCGAGGAAACCTTCGTTTTGCCGACCTCTACGTGGAGCCGCATCTATGCAGCGCACAGGAAACAGGATCAGAGAGAGCTGAATCTCTTAATTTGCAACGATAACATGTATCCTCAACTTGCAGTCGCACAGTCGTCCCTGAAGAGCGTGAATAGAAAAGCTGAAGATGTAATAGCTGCTGAGGTGCCGGCAGATGACAGACTTCACTGGTCTTTAAATGTTGAAGAATACACTCGCTTCACATCACCTATTCGTCGGTATCTTGATATTGTAGTCCATCGCTTGCTGTTTGACACTGCCAGGCATGATCAAATGGTGGATGACATTCCAAACGTTTATCGCAGGTGTTCGTTTTTGTCCGACAATTCAAGCAAGTTTGAAAAAGATTGCGGCAGGGTTGAAGCTGCCTTCAAACTTATTAAAGCAAGTTGCAAAGTCAACGCCGTCGTGGAAATGATTGCAGATGATCATATTCGGCTACAGCTCATAGCCGATGTAAACCAGTTTCTCTCTCCAAAACAGAGGAGAATTCAGATCAGCCATTTAGGACCAATCAAGCAACCCACGTTCGAGGAATCTTCTGCATGCCTGGAGCTGGAGTGGAAGCTTAGAATTTACGACGCCTCCTCCAGGAACATCAAACAAGCAAAGAACATCGGTAGAGATCAACAAGATAGGCATCTTCGTGAGGACTGGGCTAGACTTCGGGCTTTGTTGTCTATCCAATCAAGTGATTCAAGCTCTGGTCACAAAATTCCAGGCAGTCTTTGGATGGCTATCCTGGATGCTGTCAGAGAGGAAGCTTTTGAAACCCTAAGCCGGCACATAGAGGATGTAGATGATTTAATCACTGTGGAAAAGGGAATGTTATCCGCCTCAAGACAACAGGAAGAGGAAAGTCTAACCAACATCTTTTTCGAAGAATTTGAAGAAGAAGAGGAAGAGGATGGGGATAGTAAAGACGATCAACTCAACGACGATGACGAAAAAGACTATGACGAGTTTGATGATTATGATGACGATGAAGAGGAGGATAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGAAGAAGAAAAAGACAAGGATAAAACAGAGGAAAAGAAATCTTTATATGAGAAGAACGACACTGCCATGCACTTCATTGATACCTCTCTGGTACTGAAAGTTGCCGACAATGTAAGCGTGCAACTCTCTGCAACCGACGCTGGAGGAATCATGTCACCTGAGATTCAGCTCTTTCATCTCACTTCTGGAATTGACATCTGTCTTGAGCATAGAAGGCGTCCTGATAAATGCTTCACGGCAACAGCATCAGAGCAAGCTTCTCGACCACACTATAAGTCTGTCAACACATACATCCATGCTTGGACGTCAGTACTTGATATGGAAGCTGCAACCTTGTCTGTAAGAAATGATGATACCATCATTCTGCATAACCTTGTCATGAAATGGAGACGCGATGAAAGCGGAAAATTAATTGGTGAGTTTCAGCTTAACAAGGTCTTTTGCGAAACCAGGCAGATAAAGATCGCTCGTGGGGATTACGCTTGTGTAAAAGTTTATTGCCCAACGCCTTTTTCAACCAGTCTTTCTGATTATGAGCAGCTGAAACGGAAAGGAGAGTCCAGCCAAGGGATTGCAAAAGACGCCCTAGGAGACCGTGTATTATCTGTAGCACCTGCAGAGAACTTTAAGTATGGATCAGAAAGTGACTATGGAGTCAAGGAAGGAATAAGCAACTCGCCCTTGAGCCAATGGGTTAGCCACTGCATCTTTACTCTTGCTAATATGTCCATCTTGCCCATCGCTGATAACTCGCAGATGAAATGCAGGTTGAAGCTTTTTCAAAGCTCAACGAAGGTTCCTGAAAGTCTTGGTAACGGTGACAGTTGGATTTGTACATTGGAGATAATAAAGCAGACTGTTCCAACAAGACGAATGATATCAAATTTGATGAGGCTTCCGGAGGTGGAAAAATCAGCTGGAGAGCTCCTTCCGCTTGCTCATAGCATATGTCTGGGGAATGCATTTAAACTGCCTGGTTTACCAATTCCATTGCCGAGTGAGACACTTTCAATTGCTGACCACAAACGTGATTGTAATTTGACAAAGCTTAATGACTTTCAAGTTAGAGCAATCAGAAGATCGCTGAGAGGACGTTTTACCCTTATCCAAGGACCACCAGGAACTGGAAAGACTGTAACCGGAGTTCACATTGCCTACTGGTTTGCGCAGATGAATCAGAAAAAGTTCGACAATGGTGAATTTCCACCAGAGAGTCCCCCTCAGGTCCTGTACTGTGGGCCGTCAAACAAATCCGTGGACGTTGTTGCAGAGTACTTGTTGAGGATCCCTGGTAATAAGATCCTTCGAGTATACGGAAAGGTCATCGAAGAAGAAGAATTTCCGATTCCAAACCAAGTCAGTCAAACGCGACACACGGCAAACTATGAAGTTCCTGAGAGCCTAAAAGATGTGGCTCTGCATTTCGTGATTAGAGACGAGGAGAGGTCACCACGCTATGCTAGGAAGTTGAAGAGATTCGAAAGAAAGTTTGCCAGAATGAAAAGAAAAAAAAAGAAAGTACCCGACAAAATAGTCGGAAGCTATCTACAG

Transcript

gfas1.m1.12482.m1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E9QAM5	3'-5' exoribonuclease HELZ2 OS=Mus musculus OX=10090 GN=Helz2 PE=1 SV=1
Q9BYK8	3'-5' exoribonuclease HELZ2 OS=Homo sapiens OX=9606 GN=HELZ2 PE=1 SV=7
Q6DFV5	Probable helicase with zinc finger domain OS=Mus musculus OX=10090 GN=Helz PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000671 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan
PF00773 all species →	RNB	RNB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR050180 all species →	Family	RNR Ribonuclease	Interproscan
IPR001900 all species →	Domain	Ribonuclease II/R	Interproscan
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23355 all species →	RIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0006402 all species →	Biological Process	mRNA catabolic process	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.12482.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.