Gene detail

Detailed information of gfas1.m1.13407.m1 in Galaxea fascicularis

Genomic Location: xfSc0000008:129184...145918
NR annotation: CAH3192832.1, unnamed protein product [Porites evermanni]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.13407.m1

ATGTTCCAAGGGAGAATGGACTGGTCTCCTAACAGAAAACCTTCCGAAGATGAACTATTTGGCTGTTGGGAGATTGTGTCTTGCAGGCTCTCGGACGAAAGCTATCCTTCAGTCGAAGGTGTAAAATTCCAGCTGGAAGACGGTGGAGATCTGGTGTGGATGATGCCACCAGCTTCAGAACAAGAGACTGATCTTCCTTTCTTCTCTTGTGAAACATTTGTGTTTGATAGCTACGAAGGAGAACTGATTTGCTATGGTAGTGATGTAGACAGAATTGGGCTGAAGTGTGTGCTTGAGTCAGACCAGCTTGTGTTGTGCTATGATAAACATTTGAAGTTATGTTGTCAAAAGGTGGATCAAGTTGAATGTGAAAATCTGTCTTCCGATCCTTATACTCTGCTTCCTGCATTAGACAAGGGATTTTTCACAGACATAACATTCATTGCCAACAATGGTGAAAAGTTCTTAGCTCACAAGACAGTCCTGAGTTGTTTCTTTGCTGACATCTTTACCTGGGACAAAACTCCATATTTCCTCAGTGACCTGCCATCAGATGTGCTTCGTGGTCTCTTGCATTACTTTTACACATGCTCTTTGGCAAGTGACATCTCGGAAGACACAGCAAAGGAGCTTCTCAGAATATCACAACTGAATGGCAACAATATTGGGAAATTAGGACAACTTTGTACTGAGTTTCTTGAAGCAACAGCTGTGAAAAACAGAATTAAAAGCCTGATGAGTGAACTATACAGCATTCTAGAGAACATATTGCAAATGACAGAATCTCTTGCTGCTGGCCTCCGTCAAAACAGTGATCCTTCAAAAATTGTTGAGGTGACAAAGATTGCACTGAGACATCTTGCTATAGGAATTTTAAAGTTTGTTTTGATTGGTGACATTTTTACCAAGCACAAGTCTGACTTGTCAAGAGATGAACGACAAGAAATTATTCAAAACTGTAGAAAAAGGTTACCTTGTTGTGTGGAGGTGTTAGAGAAGTTCTTGACCATTCTTCAAGCTGCATTGTCTGGATTCAGTAATTCCGAAAAGGAGTCAGTGGCTTTGTATCTTATTCCCGAGATTGAAAAGGTGTGGTCAAAATCCACAGAACTTGGAAGTAGTGCTGATGAAGCACTCAAAAAGATCACTCGGAGAGCAGACAAGGATCACAAGAAGAAAACTCACCTTCCTAAGATGGCTACATCCTTAAGCAGGACGCTGAGAAATGCTGTTCACCTAAGGGAAGTTTTAACATTGAAGAGATTTCACCAGAAAGTTTCATCTTCACTTATGTTTATGTTACAGAAAAGAGGGGATTTTAGTTCTTTATCGGAGGAGCAGAAGCTCAGGACAGTGGTGAAGAGCATGGACAAAATAATTGTAGAAATTCCAGACCAGGTTCGCACTCTTCACAAATTTCCGAGAATATTCGAAAAAAAGTTGCCCTGGAAGGAATGGAAGCATTCATTTAAATTGTGGACATCGTTTATGAGTCTGGCGTTGAGAAAACTGTTCACGAACAGAGACATCCTTGAGCCAGTGATAGAACAAACCAACAGCCTAGTGCACGAGGAAGAATTCACGCGCCTTGTTGAAGAACTTGGTTTTCTAAAAGAAAATGGCGAGGAGGACAAGGTACAAAACCCAACACCGCCAAAGAAGAACACCGCTCGTGTGGAGTCCGTGGTCACTTGTCCAACGGGAGATAAAAGTCCTCTCGCACAATCAGTCATGCAACTGTTAATATCTGGGGAACATGCTGACATGAGATTCGTTTTAGACAAAACAGACTTGACTCATTGTCCCACTTGTGCCGAGTATGAAGGAAAGGTACCGGAGATTCCTGCGCACAGAGTGATTGTAGCAACTCGTTGTGAGTGGTTTAGAAGAGCGTTGCTCAGTGGCATGAAGGAATCCATTGAAAGGCAGATCTTAATTCCCGACACAAGTCCCTGTTTATTTCACAAGTTTCTCGGTTATGTGTACAGCGGTATGGTAGATATGCGCAGCCTCAGTATGGATGAAGTTCCTGAAATGTTAGCACTGAGTGATAAGTATGAGGTGGATTCTTTGAAGGATATTTGCGAAGAAATGTTGCTAAAAGATCTTGACCAAGAAACTGTGCTTTTTTACCTGGGAGTGGCGGAGCAGTTTTCCGTACGGCGGTTAAAGGAAGATTGTTTACATTACATCACAGCACACCCTGAGGTGATGGATTCAGACGTGTTCCAAGAGCTTCCGTCCGATTTGAAACAGGAAATCATGGATAAAGTTCGCCAGAACATGCCTAAAGTTCACCCGATTACAGAGGAAGTGAGGCAGGCTTTTGCTGTGACTACTTTAGAAGACTTTGAGGATTTCACGGGACACGACACAGATGATAGCGAATATGATGACGATGACGACGTTATGCCACGAGGTAACAGCCAAGTTGAACGCTGCATTGAAATCCTCCGAGGTATTCTGGGGGATGCTTTACCCAGGAGAGAGCTGGTACGAGTCACTCTTGCTGCAGACTGTGACCCAAACAGAGCGCTGAACTTCTATTTTTCGTGA

Transcript

gfas1.m1.13407.m1

CAGTAAACAGCTCTGTCAAATTCAGCTAAAAATATCTGTGCGGCGATTATCCAAAATTTTCCGGAGTTAATAAATCAATGTTCCAAGGGAGAATGGACTGGTCTCCTAACAGAAAACCTTCCGAAGATGAACTATTTGGCTGTTGGGAGATTGTGTCTTGCAGGCTCTCGGACGAAAGCTATCCTTCAGTCGAAGGTGTAAAATTCCAGCTGGAAGACGGTGGAGATCTGGTGTGGATGATGCCACCAGCTTCAGAACAAGAGACTGATCTTCCTTTCTTCTCTTGTGAAACATTTGTGTTTGATAGCTACGAAGGAGAACTGATTTGCTATGGTAGTGATGTAGACAGAATTGGGCTGAAGTGTGTGCTTGAGTCAGACCAGCTTGTGTTGTGCTATGATAAACATTTGAAGTTATGTTGTCAAAAGGTGGATCAAGTTGAATGTGAAAATCTGTCTTCCGATCCTTATACTCTGCTTCCTGCATTAGACAAGGGATTTTTCACAGACATAACATTCATTGCCAACAATGGTGAAAAGTTCTTAGCTCACAAGACAGTCCTGAGTTGTTTCTTTGCTGACATCTTTACCTGGGACAAAACTCCATATTTCCTCAGTGACCTGCCATCAGATGTGCTTCGTGGTCTCTTGCATTACTTTTACACATGCTCTTTGGCAAGTGACATCTCGGAAGACACAGCAAAGGAGCTTCTCAGAATATCACAACTGAATGGCAACAATATTGGGAAATTAGGACAACTTTGTACTGAGTTTCTTGAAGCAACAGCTGTGAAAAACAGAATTAAAAGCCTGATGAGTGAACTATACAGCATTCTAGAGAACATATTGCAAATGACAGAATCTCTTGCTGCTGGCCTCCGTCAAAACAGTGATCCTTCAAAAATTGTTGAGGTGACAAAGATTGCACTGAGACATCTTGCTATAGGAATTTTAAAGTTTGTTTTGATTGGTGACATTTTTACCAAGCACAAGTCTGACTTGTCAAGAGATGAACGACAAGAAATTATTCAAAACTGTAGAAAAAGGTTACCTTGTTGTGTGGAGGTGTTAGAGAAGTTCTTGACCATTCTTCAAGCTGCATTGTCTGGATTCAGTAATTCCGAAAAGGAGTCAGTGGCTTTGTATCTTATTCCCGAGATTGAAAAGGTGTGGTCAAAATCCACAGAACTTGGAAGTAGTGCTGATGAAGCACTCAAAAAGATCACTCGGAGAGCAGACAAGGATCACAAGAAGAAAACTCACCTTCCTAAGATGGCTACATCCTTAAGCAGGACGCTGAGAAATGCTGTTCACCTAAGGGAAGTTTTAACATTGAAGAGATTTCACCAGAAAGTTTCATCTTCACTTATGTTTATGTTACAGAAAAGAGGGGATTTTAGTTCTTTATCGGAGGAGCAGAAGCTCAGGACAGTGGTGAAGAGCATGGACAAAATAATTGTAGAAATTCCAGACCAGGTTCGCACTCTTCACAAATTTCCGAGAATATTCGAAAAAAAGTTGCCCTGGAAGGAATGGAAGCATTCATTTAAATTGTGGACATCGTTTATGAGTCTGGCGTTGAGAAAACTGTTCACGAACAGAGACATCCTTGAGCCAGTGATAGAACAAACCAACAGCCTAGTGCACGAGGAAGAATTCACGCGCCTTGTTGAAGAACTTGGTTTTCTAAAAGAAAATGGCGAGGAGGACAAGGTACAAAACCCAACACCGCCAAAGAAGAACACCGCTCGTGTGGAGTCCGTGGTCACTTGTCCAACGGGAGATAAAAGTCCTCTCGCACAATCAGTCATGCAACTGTTAATATCTGGGGAACATGCTGACATGAGATTCGTTTTAGACAAAACAGACTTGACTCATTGTCCCACTTGTGCCGAGTATGAAGGAAAGGTACCGGAGATTCCTGCGCACAGAGTGATTGTAGCAACTCGTTGTGAGTGGTTTAGAAGAGCGTTGCTCAGTGGCATGAAGGAATCCATTGAAAGGCAGATCTTAATTCCCGACACAAGTCCCTGTTTATTTCACAAGTTTCTCGGTTATGTGTACAGCGGTATGGTAGATATGCGCAGCCTCAGTATGGATGAAGTTCCTGAAATGTTAGCACTGAGTGATAAGTATGAGGTGGATTCTTTGAAGGATATTTGCGAAGAAATGTTGCTAAAAGATCTTGACCAAGAAACTGTGCTTTTTTACCTGGGAGTGGCGGAGCAGTTTTCCGTACGGCGGTTAAAGGAAGATTGTTTACATTACATCACAGCACACCCTGAGGTGATGGATTCAGACGTGTTCCAAGAGCTTCCGTCCGATTTGAAACAGGAAATCATGGATAAAGTTCGCCAGAACATGCCTAAAGTTCACCCGATTACAGAGGAAGTGAGGCAGGCTTTTGCTGTGACTACTTTAGAAGACTTTGAGGATTTCACGGGACACGACACAGATGATAGCGAATATGATGACGATGACGACGTTATGCCACGAGGTAACAGCCAAGTTGAACGCTGCATTGAAATCCTCCGAGGTATTCTGGGGGATGCTTTACCCAGGAGAGAGCTGGTACGAGTCACTCTTGCTGCAGACTGTGACCCAAACAGAGCGCTGAACTTCTATTTTTCGTGACCCAAGCGTAACACGCCGAATTAGGAAGGTCAGCTAGGGCGTAAAGGAGGAGATATCCGTCAGCGAGATTCATTGCGCTTTCTTTCTACAATTAGAGCAGACAAAGACTGATCAAAAGGCATTATTCTCCTTAGCCTGTGCAATGTTGATGAGACCTAACGAGATCCTGAGGTTTGTCCATCGCCGCTACTCTGTCAGTAATTTTGTTGTGCGCATGCGTGTAGTGTCGAGGCAGTCAGGATTTAGTTCGTTTGCTGAGCCACTGTAAGACACAAATCACTGGTCACTGACTCGATAGCGAAGTTAACATTTTTGTCACATATGATCAACTCCTTTCGTCATGAGTTTGTGGGTCGTACTTGTATCTTAATCAAAAAGCTCGCATCATCGGCCAAATTTCGATTCAGCCCGACACGAGCGCATGGCGTCCAAATTTCCAGAAAGTGAAGTTCTTCACGATAACTTAATTAACAATAACAGCGACAATGATAACGATCTCTCCGTCAGTGCACGCGCTGTGATTGTCAATTTTACGGGCCGTAGTCTACTGTACGGCCCGCTAAATTTTAAATTTCCGTTCCCGCGCGCCCGGTTAACCTCAGAGGTATAGTAAATATCTTATTAACCTCGTTTTCTGGGTCCATACTGTTAGTTAGGGATCCTCGTTTTTTCCAATCGCGAAGCCCGCGGCCCATAAATCAACGGGAAAAGACCTGTTACGCAACTTACAGCACAGATCTCGAACTCGGTTAGTAAGAAGTATATAATAAGCAAGTTTTCTTGACCACTTTTTGTTTTGTTTGCCATTTTTTTCGGCAACTTGTTTCCTGGATTGCCATGGTCAGGGAAACTTTGTGTCATATTAGGGAAATTCTAAATTGCACCTGAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8C726	BTB/POZ domain-containing protein 9 OS=Mus musculus OX=10090 GN=Btbd9 PE=1 SV=1
Q5PQR3	BTB/POZ domain-containing protein 9 OS=Rattus norvegicus OX=10116 GN=Btbd9 PE=1 SV=1
A4IFG2	BTB/POZ domain-containing protein 9 OS=Bos taurus OX=9913 GN=BTBD9 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007142 (this species only)
Transcription factor family	ZBTB · all TF in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR037189 all species →	Homologous_superfamily	HBS1-like protein, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24413 all species →	SPECKLE-TYPE POZ PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030162 all species →	Biological Process	regulation of proteolysis	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.13407.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.