Gene detail

Detailed information of gfas1.m1.13441.m1 in Galaxea fascicularis

Genomic Location: xfSc0000009:251254...272885
NR annotation: CAH3189298.1, unnamed protein product, partial [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

gfas1.m1.13441.m1

ATGGCTACTCTCTTCCGATTTTGCATTTATATTCTGCTGATTTCTTTAAAACTGGCCTCCGCCTACCTGGACGATCAGTGCCGAGAAATGGCCTTCCCCGCTTATTATTTCTTCGCTGAAAAAAGGCTGATTAAACACAACATAACAACTGTCCAAGTACCGGATATGGGTGCGTGTGAGCTGCTTTGTTACCACGAGGACAACTGTGTCAGCATTAACTTTGCGAGAAAAGCGGGTCCAGAGGGGACAATCAGCTGTGACTTGAACAATTCTACTCATCGAGAACACGGCGAACATCTCGTGACCACAGAAGATTACTTCTACCGTGGATCAGACAATGCTTGTGGTCACGCGTACGCATCTTGTCAGAATGGCGGTACCTGTCAATCCGGATTTACAAGCAAGCGATATCGGTGTCTATGTCCTTCCGGTTTTACCGGTGAAAACTGTGAGAAAGGGTATGAAGAAGAAGAAGAAGAAGACGAAGATGATAATGCGACTATTCATCTCATTTGTATGCATGGATTGTTACAGATGTTGACGAGTGCACTGACAATACCCATAACTGCAGCAAAGACAATGCCACGTGTAGGAACACCAAAGAGTCATTTAATTGCAGTTGCAAGCCTGGATATACTGGTGATGGACACAACTGTACAGATGTTGACGAGTACACTGACAATACCCATAACTGCAGCAAAGACAATGCCACATGCAGGAACACCAAAGGGTCATTTAATTGCAGTTGCAAGCGCGGATATACTGGTGATGGACACAACTGTACAGATGTTGACGAGTGCATTGAGAATACCCATAACTGTAGCAAAGACAATGCCACGTGTAGGAACACCAAAGGGTCATTCAATTGCAGTTGCAAGCGCGGATATACTGGTGATGGACACAATTGTACAGATGTTGACGAGTGCACTGACAATACCCATAACTGCAGCAAAGACAATGCCACGTGTAGGAACACCAAAGAGTCATTTAATTGCAGTTGCAAGCCTGGATATACTGGTGATGGACACAACTGTACAGATGTTGACGAGTACACTGACAATACCCATAACTGCAGCAAAGACAATGCCACATGCAGGAACACCAAAGGGTCATTCAATTGCAGTTGCAAGCGCGGATATACTGGTGATGGACACAACTGTACAGATGTTGACGAGTGCATTGAGAATACCCATAACTGTAGCAAAGACAATGCCACGTGTAGGAACACCAAAGGGTCATTCAATTGCAGTTGCAAGCGCGGATATACTGGTGATGGACACAATTGTACAGATGTTGACGAGTGCACTGACAATACCCATAACTGCAGCAAGGACAATGCCACATGTAGGAACACCAAAGGTCACTGTCTTAGACGTTTGTTCTGCAAGCAAGCCATGTGAAAACGGAGGCACGTGTGAAAACAAGGATAACAGTTACATTTGCGAGTGCCCACCTGAATTCAAAGGAAAGAACTGCATGATTAATTGTTCAATAGATTCAAAAATTTTGGGTAAAAACGAATCTTTTCTTCGTCATTTTTACCGGTTTCTCAAACCTGTGGGTGGAGACAAGTGCCAATGGCTGTTATGTTACAGCGGTACTTCCAACTATTCTAACTTCCGCATACCGCAATACTGTGGTGGAAAGGAAAATACTGTTACCATTATAAAAACGGGTGATTATATTTTCGGAGGATATACAGACATTGCTTGGGAAAACGAAAACAGCGGTTTTAGTGAGACTTCCGAAGCATTCATCTTCTCACTCAGCAACGAAAAAAGAACCAAGCCATTCAAGAGCAAGGTTGAAAAGCCAGCAAAAGCAATTTACAATTGTCCCGAATGTGGTCCAGTATTTGGCGGCAAAAAGAACGGGGATAATGCGAAAGACCACGACATCTTCATTTCAAACTCTAACCGAAAAATGTCATACACAAAGTTTCCCAAATCTTACTCTCGCCCAAGTGACGTACATGGACATAATCACTTCCTGGCTGGCTCTCACCACAACTTCTCACCTGATAACGTGGAGGCATTGAAACAGAAACTAACGATACACAAAACCGGCCAGTTCTTCAAGTCACCTTGGTTTAAT

Transcript

gfas1.m1.13441.m1

CAGAAATTTGGCATCTCCGGTAGAGGTTTTCACTGAAGAAAGTTCACATGGCTACTCTCTTCCGATTTTGCATTTATATTCTGCTGATTTCTTTAAAACTGGCCTCCGCCTACCTGGACGATCAGTGCCGAGAAATGGCCTTCCCCGCTTATTATTTCTTCGCTGAAAAAAGGCTGATTAAACACAACATAACAACTGTCCAAGTACCGGATATGGGTGCGTGTGAGCTGCTTTGTTACCACGAGGACAACTGTGTCAGCATTAACTTTGCGAGAAAAGCGGGTCCAGAGGGGACAATCAGCTGTGACTTGAACAATTCTACTCATCGAGAACACGGCGAACATCTCGTGACCACAGAAGATTACTTCTACCGTGGATCAGACAATGCTTGTGGTCACGCGTACGCATCTTGTCAGAATGGCGGTACCTGTCAATCCGGATTTACAAGCAAGCGATATCGGTGTCTATGTCCTTCCGGTTTTACCGGTGAAAACTGTGAGAAAGGGTATGAAGAAGAAGAAGAAGAAGACGAAGATGATAATGCGACTATTCATCTCATTTGTATGCATGGATTGTTACAGATGTTGACGAGTGCACTGACAATACCCATAACTGCAGCAAAGACAATGCCACGTGTAGGAACACCAAAGAGTCATTTAATTGCAGTTGCAAGCCTGGATATACTGGTGATGGACACAACTGTACAGATGTTGACGAGTACACTGACAATACCCATAACTGCAGCAAAGACAATGCCACATGCAGGAACACCAAAGGGTCATTTAATTGCAGTTGCAAGCGCGGATATACTGGTGATGGACACAACTGTACAGATGTTGACGAGTGCATTGAGAATACCCATAACTGTAGCAAAGACAATGCCACGTGTAGGAACACCAAAGGGTCATTCAATTGCAGTTGCAAGCGCGGATATACTGGTGATGGACACAATTGTACAGATGTTGACGAGTGCACTGACAATACCCATAACTGCAGCAAAGACAATGCCACGTGTAGGAACACCAAAGAGTCATTTAATTGCAGTTGCAAGCCTGGATATACTGGTGATGGACACAACTGTACAGATGTTGACGAGTACACTGACAATACCCATAACTGCAGCAAAGACAATGCCACATGCAGGAACACCAAAGGGTCATTCAATTGCAGTTGCAAGCGCGGATATACTGGTGATGGACACAACTGTACAGATGTTGACGAGTGCATTGAGAATACCCATAACTGTAGCAAAGACAATGCCACGTGTAGGAACACCAAAGGGTCATTCAATTGCAGTTGCAAGCGCGGATATACTGGTGATGGACACAATTGTACAGATGTTGACGAGTGCACTGACAATACCCATAACTGCAGCAAGGACAATGCCACATGTAGGAACACCAAAGGTCACTGTCTTAGACGTTTGTTCTGCAAGCAAGCCATGTGAAAACGGAGGCACGTGTGAAAACAAGGATAACAGTTACATTTGCGAGTGCCCACCTGAATTCAAAGGAAAGAACTGCATGATTAATTGTTCAATAGATTCAAAAATTTTGGGTAAAAACGAATCTTTTCTTCGTCATTTTTACCGGTTTCTCAAACCTGTGGGTGGAGACAAGTGCCAATGGCTGTTATGTTACAGCGGTACTTCCAACTATTCTAACTTCCGCATACCGCAATACTGTGGTGGAAAGGAAAATACTGTTACCATTATAAAAACGGGTGATTATATTTTCGGAGGATATACAGACATTGCTTGGGAAAACGAAAACAGCGGTTTTAGTGAGACTTCCGAAGCATTCATCTTCTCACTCAGCAACGAAAAAAGAACCAAGCCATTCAAGAGCAAGGTTGAAAAGCCAGCAAAAGCAATTTACAATTGTCCCGAATGTGGTCCAGTATTTGGCGGCAAAAAGAACGGGGATAATGCGAAAGACCACGACATCTTCATTTCAAACTCTAACCGAAAAATGTCATACACAAAGTTTCCCAAATCTTACTCTCGCCCAAGTGACGTACATGGACATAATCACTTCCTGGCTGGCTCTCACCACAACTTCTCACCTGATAACGTGGAGGCATTGAAACAGAAACTAACGATACACAAAACCGGCCAGTTCTTCAAGTCACCTTGGTTTAAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00024	PAN_1	PAN domain	Domain	Interproscan
PF07534	TLD	TLD	Domain	Interproscan
PF00008	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003609	Domain	PAN/Apple domain	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR051830	Family	Neurogenic locus notch homolog	Interproscan
IPR006571	Domain	TLDc domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24033	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan