Gene detail

Detailed information of gfas1.m1.1409.m1 in Galaxea fascicularis

Genomic Location: Sc0000040:127897...140853
NR annotation: XP_020625778.1, inner nuclear membrane protein Man1-like [Orbicella faveolata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.1409.m1

ATGGCGGCCAGAGACAGTGATATTTCTGATGACGACCTGCGCCGCCAACTGCAGGCTTTAGGAGAAAAAGTCGGACCCATAACGCAGAGCACGAGGCCTGTTCTTGTTCGAAAACTTACCCGTTTGGTTAATGAGCCAAAAAACACTAGGATTAGCAAAGAAAAGACCCCACCGAGGAGGGGAACCTCACCTAGACGCAAGTCGTTACCCGCAACTACCAGAAGCCACAGTCCTTCTCGTAGACTCATCGGATTTTCCAGTGATGAAGAAGACTCAAGGCCGAGCCATTCGAGCACTTTTATAGATACAAGTAAATCTAGAGGTAGGCGTAGAGAAGAAAAGGCTAGTAATGCTGAATCGTCGGAAAAAACGGACAAGACAACACTGCGGAGAAGTAATTTAAGGCAGCGGGTGCCAAGTTTTATCGATAACGTTCCTGAGAGGACTGTGGATACTACGGACGGAAATAGCGGAGAGTTTTCAAATCGGGACGGACAAGTGTATCACAAACCAAAAATTCGATCAAGTGGCTTAACAAGATATTGGCGAACTATAAAACGTGATAGAGATGAAAATGAAAGATCAGAAACCGTCCGAGCATCTTCAAACCACGACGAAAGGGAACGCGTGATTGCTGAGTCGCAATTAAACACGACTCTTCGAGAGAGACAGACCGGAGCCAGAGAGCCGAACGCTAGCTCATTCTGGTCCTCGACAGTAAAGATCTCATTGATGATAATTGTCATTTGCATTTTTATCCTGTTGTATGCGACTCTCAAGAACCACTCGAGCGAGATAGACCTCCTTGAAAAATTAGCTAAACTTCCAGTTTGTAAAGAGAATAACCAAATGACGACATTTGGCAACGATAAGCTTCTTGATTGTGTTCCATTATTGAACATCAGCGAGAAATATGCAGATTCTTTGTATAAAAAGCTGACTACAAAAGCAGGTTTATTTGAATGTCAAGATCCAAGTGTGGGGAATAGAAATGTTTCTTTGGAAGAATTCAAGGGACAAATCAGGGAAGACAATTATAGCAGACCACTGGCGGAACAGGAGTTGATCTTAAACAGATCACTGGAACTGATTCTTAATCATCCTGAATGGAAAATAAGGTTGTTTGATGAAAACAACACAAAAGTAGATTCCACTGGAAAAGTTAAATGGATTGATTCTTCAGTTTCCATGAAACCCATATTATGTCGCATTAAGGAAGCAATGTCCAGATTGGCGTATCTCTCTTTTGTCATTGGGTTTGACATCCTGCGAGAGCACCATGAAGCCAGTAAAACTGAGAAGAATTTATTACCTTACCTTCCTATTCCTCATGTTCGAGATATGCTCATTCCTCCATCAGACAGACAAAGATTGGCCAAGGCCTGGAACAGAGCAGTAAGGTTTTTGAGTGCAAATGAATCTCGTATTCGAGTTGAAAGCCAAAGAATAGCAGGAGAAGATTTTGAAGTTTGGAGGTGGATTCAGGTTGCCACACCTAAACCTCACAGCCCAAAATTGTCACGTTCAGGCGACAAGCGTGGGAAATACTGGCAGGGACAAGCATTTGAAAACTTCCAATCTGCTGTAAATCCTCCAGTAATCAGCCCTACACCATGTCTGAAGATAAGAAACATGTTTGACCCTGATGTTGAAACTGAGGATGGTTGGCATGTGATGATTCAAGATGCCATATTGGAGAAATGTATTGAGAATGGAGCAGGCGTTGTTCACATAGCTGTTGATAAGAGCTCTAGCGAGGGATGTGTGTATGTGAAATGTGACACTCACCATTCAGCGGGACTTGCCTTTAGAAGTCTTCATGGATGTTGGTTTGATGGCCGCCTCGTTGCAGTGAAGTATTTAACTCTGAAGCGGTATCATCAGCGGTTCCCGGTTGCCATGGAAGCTACTGAACGCCTGTCGCCATCGGGCCTCTCTCCATCCTCTCTTGTTACTTTTGATCCCGATGAAGCTGGAGATGAAGACATCAATGATTCTGATATTGACCTTTAG

Transcript

gfas1.m1.1409.m1

CGCAAAGCAGCCTCGCCTGCCGAGCAAATCTTTTGAAAATGGCGGCCAGAGACAGTGATATTTCTGATGACGACCTGCGCCGCCAACTGCAGGCTTTAGGAGAAAAAGTCGGACCCATAACGCAGAGCACGAGGCCTGTTCTTGTTCGAAAACTTACCCGTTTGGTTAATGAGCCAAAAAACACTAGGATTAGCAAAGAAAAGACCCCACCGAGGAGGGGAACCTCACCTAGACGCAAGTCGTTACCCGCAACTACCAGAAGCCACAGTCCTTCTCGTAGACTCATCGGATTTTCCAGTGATGAAGAAGACTCAAGGCCGAGCCATTCGAGCACTTTTATAGATACAAGTAAATCTAGAGGTAGGCGTAGAGAAGAAAAGGCTAGTAATGCTGAATCGTCGGAAAAAACGGACAAGACAACACTGCGGAGAAGTAATTTAAGGCAGCGGGTGCCAAGTTTTATCGATAACGTTCCTGAGAGGACTGTGGATACTACGGACGGAAATAGCGGAGAGTTTTCAAATCGGGACGGACAAGTGTATCACAAACCAAAAATTCGATCAAGTGGCTTAACAAGATATTGGCGAACTATAAAACGTGATAGAGATGAAAATGAAAGATCAGAAACCGTCCGAGCATCTTCAAACCACGACGAAAGGGAACGCGTGATTGCTGAGTCGCAATTAAACACGACTCTTCGAGAGAGACAGACCGGAGCCAGAGAGCCGAACGCTAGCTCATTCTGGTCCTCGACAGTAAAGATCTCATTGATGATAATTGTCATTTGCATTTTTATCCTGTTGTATGCGACTCTCAAGAACCACTCGAGCGAGATAGACCTCCTTGAAAAATTAGCTAAACTTCCAGTTTGTAAAGAGAATAACCAAATGACGACATTTGGCAACGATAAGCTTCTTGATTGTGTTCCATTATTGAACATCAGCGAGAAATATGCAGATTCTTTGTATAAAAAGCTGACTACAAAAGCAGGTTTATTTGAATGTCAAGATCCAAGTGTGGGGAATAGAAATGTTTCTTTGGAAGAATTCAAGGGACAAATCAGGGAAGACAATTATAGCAGACCACTGGCGGAACAGGAGTTGATCTTAAACAGATCACTGGAACTGATTCTTAATCATCCTGAATGGAAAATAAGGTTGTTTGATGAAAACAACACAAAAGTAGATTCCACTGGAAAAGTTAAATGGATTGATTCTTCAGTTTCCATGAAACCCATATTATGTCGCATTAAGGAAGCAATGTCCAGATTGGCGTATCTCTCTTTTGTCATTGGGTTTGACATCCTGCGAGAGCACCATGAAGCCAGTAAAACTGAGAAGAATTTATTACCTTACCTTCCTATTCCTCATGTTCGAGATATGCTCATTCCTCCATCAGACAGACAAAGATTGGCCAAGGCCTGGAACAGAGCAGTAAGGTTTTTGAGTGCAAATGAATCTCGTATTCGAGTTGAAAGCCAAAGAATAGCAGGAGAAGATTTTGAAGTTTGGAGGTGGATTCAGGTTGCCACACCTAAACCTCACAGCCCAAAATTGTCACGTTCAGGCGACAAGCGTGGGAAATACTGGCAGGGACAAGCATTTGAAAACTTCCAATCTGCTGTAAATCCTCCAGTAATCAGCCCTACACCATGTCTGAAGATAAGAAACATGTTTGACCCTGATGTTGAAACTGAGGATGGTTGGCATGTGATGATTCAAGATGCCATATTGGAGAAATGTATTGAGAATGGAGCAGGCGTTGTTCACATAGCTGTTGATAAGAGCTCTAGCGAGGGATGTGTGTATGTGAAATGTGACACTCACCATTCAGCGGGACTTGCCTTTAGAAGTCTTCATGGATGTTGGTTTGATGGCCGCCTCGTTGCAGTGAAGTATTTAACTCTGAAGCGGTATCATCAGCGGTTCCCGGTTGCCATGGAAGCTACTGAACGCCTGTCGCCATCGGGCCTCTCTCCATCCTCTCTTGTTACTTTTGATCCCGATGAAGCTGGAGATGAAGACATCAATGATTCTGATATTGACCTTTAGTTCCCTGCTGTCGTTTCTTGATTGGCCTGCTCGTCAATATGTTGAACTGCGGTTAACAAGCCATCTTCCTGATTTGGGAGTGCGATGGATGCGTACACAGAAACTAGATTTCACTTCAAAGAATGAACAGAATGAAACAGAAAATTTGTCAAACTGAAAATGATTATCGAAAAACAATCAGTTGCGTTAGAAATTAGTGGGCAGTGGTTGGTCTTCACTTGAATGGTCACACTTTAGGATTTCGAACATAAACCAAAGGTTAGAACCACCTTGTGCCGCTTGATAAATAGCACCAATGGAAAGACCTGTTTAACAAATAGCACCGTCGGAAAGACCTGCTTTTGACTGAACACTCTTAGTGAATAGTCACGATAACTAAGGATGTTACCCACCAGCGCAACAAGTCAACCTTTCACAGGATATCGAGGAGTGGTATAGGAACCTACTGCTCAGTACCTGGCATTGAATGATCATACATTAGTATTTCATCCACAGACTTGTACAGTTGGTAGTCACATGGAAATTCAAGAGTCAAAAGTCAAACAAAAAGATCTTGAAAAACAAAATGTGCCACTCTCAAGTACTTTGCCGAGTTTTGATTTCAGTGGCCAAACGGCACGATTTTGTCCACAGATTTCAAAGCTGTAAGGAATTCCTAGACTACAAGAGGCTTCTACTTTAAGGAATTTTTGATAAGGGGAGTAGTTTGTTGCAGGGAGTTTGCAGTTAATATTCAAGCTCAAGGTATTTGTGAGAGTTAAAGCTGCATCCGTGATTAGGCAGGTCTCTTTTACAGGTCACATTCCATAGGGCACAGGTACGGGTCACTGTTTTGTCGATTGGTAACTAAGGCAAACAGTTCCACCTCGATCTAAAGCAACATTGTGGATAGTGATTAGGGCTAGGAGACACTTTTTGTAGCACGGTGACCGTGAAATGTGACCTGTAAAAGAAACCAACCGGCCATATTTAGAACTTGTTTGGACTCACTACACTTCGCCATCTTTGGTCGGCGCCATGCGCCACTTTGTTAGTGGTTTCATTTGCTGTTTCTCTTGTTGCAGAGTGAAGAGTCGCCTATCTACAGTTATTAAAGTATATAGCAATGAAAGTGTTCATTGGTTAAGGCGTAGTGTCATCATTCCTTCGTAAACACAAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2U8	Inner nuclear membrane protein Man1 OS=Homo sapiens OX=9606 GN=LEMD3 PE=1 SV=2
Q9WU40	Inner nuclear membrane protein Man1 OS=Mus musculus OX=10090 GN=Lemd3 PE=1 SV=2
Q7JRE4	Inner nuclear membrane protein Man1 OS=Drosophila melanogaster OX=7227 GN=MAN1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004662 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15519 all species →	RBM39linker	linker between RRM2 and RRM3 domains in RBM39 protein	Domain	Interproscan
PF03020 all species →	LEM	LEM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR011015 all species →	Homologous_superfamily	LEM/LEM-like domain superfamily	Interproscan
IPR041885 all species →	Homologous_superfamily	MAN1, winged-helix domain	Interproscan
IPR003887 all species →	Domain	LEM domain	Interproscan
IPR052277 all species →	Family	Inner Nuclear Membrane ESCRT-Associated Protein	Interproscan
IPR029123 all species →	Domain	Splicing factor RBM39, linker	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034394 all species →	Domain	MAN1, RNA recognition motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13428 all species →	INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006998 all species →	Biological Process	nuclear envelope organization	Interproscan
GO:0030514 all species →	Biological Process	negative regulation of BMP signaling pathway	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19410	LEMD3; inner nuclear membrane protein Man1	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.